A framework for human microbiome research by Friedman, Jonathan, Smillie, Chris Scott, Alm, Eric J.

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Two dynamic regimes in the human gut microbiome by Gibbons, Sean Michael, Kearney, Sean M, Smillie, Chris S, Alm, Eric J

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Unraveling the processes shaping mammalian gut microbiomes over evolutionary time by Mazel, Florent, Sanders, Jon G., Lavergne, Sebastien, Thuiller, Wilfried, Groussin, Mathieu, Smillie, Chris S, Alm, Eric J

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Natural Bacterial Communities Serve as Quantitative Geochemical Biosensors by Smith, Mark Burnham, Smillie, Chris S., Olesen, Scott Wilder, Preheim, Sarah P., Sanders, Matthew C., Yang, Joy Y., Alm, Eric J.

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Metagenomic mining of regulatory elements enables programmable species-selective gene expression by Johns, Nathan I, Yim, Sung Sun, Blazejewski, Tomasz, Dias Gomes, Antonio, Yang, Anthony, Smillie, Chris S, Smith, Mark Burnham, Alm, Eric J, Kosuri, Sriram, Wang, Harris H

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Microbial Reprogramming Inhibits Western Diet-Associated Obesity by Poutahidis, Theofilos, Kleinewietfeld, Markus, Levkovich, Tatiana, Bhela, Siddheshvar, Chatzigiagkos, Antonis, Hafler, David A., Alm, Eric J., Erdman, Susan E., Varian, Bernard, Ibrahim, Yassin, Lakritz, Jessica, Kearney, Sean Michael, Smillie, Chris Scott, Perrotta, Allison Rose

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Mobile genes in the human microbiome are structured from global to individual scales by Yilmaz, S., Huang, K., Xu, L., Jupiter, S. D., Jenkins, A. P., Naisilisili, W., Tamminen, M., Wortman, J. R., Birren, B. W., Blainey, P. C., Singh, A. K., Gevers, D., Brito, Ilana Lauren, Smillie, Chris S, Alm, Eric J, Xavier, Ramnik Joseph

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Longitudinal proteomic analysis of severe COVID-19 reveals survival-associated signatures, tissue-specific cell death, and cell-cell interactions by Filbin, Michael R., Mehta, Arnav, Schneider, Alexis M., Kays, Kyle R., Guess, Jamey R., Gentili, Matteo, Fenyves, Bánk G., Charland, Nicole C., Gonye, Anna L.K., Gushterova, Irena, Khanna, Hargun K., LaSalle, Thomas J., Lavin-Parsons, Kendall M., Lilley, Brendan M., Lodenstein, Carl L., Manakongtreecheep, Kasidet, Margolin, Justin D., McKaig, Brenna N., Rojas-Lopez, Maricarmen, Russo, Brian C., Sharma, Nihaarika, Tantivit, Jessica, Thomas, Molly F., Gerszten, Robert E., Heimberg, Graham S., Hoover, Paul J., Lieb, David J., Lin, Brian, Ngo, Debby, Pelka, Karin, Reyes, Miguel, Smillie, Chris S, Waghray, Avinash, Wood, Thomas E., Zajac, Amanda S., Jennings, Lori L., Grundberg, Ida, Bhattacharyya, Roby P., Parry, Blair Alden, Villani, Alexandra-Chloé, Sade-Feldman, Moshe, Hacohen, Nir, Goldberg, Marcia B.

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