Phylogenetic and demographic characterization of directed HIV-1 transmission using deep sequences from high-risk and general population cohorts/groups in Uganda by Bbosa, N, Ssemwanga, D, Ssekagiri, A, Xi, X, Mayanja, Y, Bahemuka, U, Seeley, J, Pillay, D, Abeler-Dörner, L, Golubchik, T, Fraser, C, Kaleebu, P, Ratmann, O, PANGEA Consortium

Intra- and inter-subtype HIV diversity between 1994 and 2018 in southern Uganda: a longitudinal population-based study by Kim, S, Kigozi, G, Martin, MA, Galiwango, RM, Quinn, TC, Redd, AD, Ssekubugu, R, Bonsall, D, Ssemwanga, D, Rambaut, A, Herbeck, JT, Reynolds, SJ, Foley, B, Abeler-Dörner, L, Fraser, C, Ratmann, O, Kagaayi, J, Laeyendecker, O, Grabowski, MK

Pervasive and non-random recombination in near full-length HIV genomes from Uganda by Grant, HE, Hodcroft, EB, Ssemwanga, D, Kitayimbwa, JM, Yebra, G, Esquivel Gomez, LR, Frampton, D, Gall, A, Kellam, P, de Oliveira, T, Bbosa, N, Nsubuga, RN, Kibengo, F, Kwan, TH, Lycett, S, Kao, R, Robertson, DL, Ratmann, O, Fraser, C, Pillay, D, Kaleebu, P, Leigh Brown, AJ

HIV-1 full-genome phylogenetics of generalized epidemics in sub-Saharan Africa: impact of missing nucleotide characters in next-generation sequences. by Ratmann, O, Wymant, C, Colijn, C, Danaviah, S, Essex, M, Frost, S, Gall, A, Gaiseitsiwe, S, Grabowski, M, Gray, R, Guindon, S, von Haeseler, A, Kaleebu, P, Kendall, M, Kozlov, A, Manasa, J, Minh, B, Moyo, S, Novitsky, V, Nsubuga, R, Pillay, S, Quinn, T, Serwadda, D, Ssemwanga, D, Stamatakis, A, Trifinopoulos, J, Wawer, M, Leigh Brown, A, de Oliveira, T, Kellam, P, Pillay, D, Fraser, C