BoardION: real-time monitoring of Oxford Nanopore sequencing instruments by Aimeric Bruno, Jean-Marc Aury, Stefan Engelen

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DuplicationDetector, a light weight tool for duplication detection using NGS data by Gustave Djedatin, Cécile Monat, Stefan Engelen, Francois Sabot

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Real-time SARS-CoV-2 diagnostic and variants tracking over multiple candidates using nanopore DNA sequencing by François Stüder, Jean-Louis Petit, Stefan Engelen, Marco Antonio Mendoza-Parra

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Joint evolutionary trees: a large-scale method to predict protein interfaces based on sequence sampling. by Stefan Engelen, Ladislas A Trojan, Sophie Sacquin-Mora, Richard Lavery, Alessandra Carbone

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Transposition favors the generation of large effect mutations that may facilitate rapid adaption by Leandro Quadrana, Mathilde Etcheverry, Arthur Gilly, Erwann Caillieux, Mohammed-Amin Madoui, Julie Guy, Amanda Bortolini Silveira, Stefan Engelen, Victoire Baillet, Patrick Wincker, Jean-Marc Aury, Vincent Colot

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FORK-seq: replication landscape of the Saccharomyces cerevisiae genome by nanopore sequencing by Magali Hennion, Jean-Michel Arbona, Laurent Lacroix, Corinne Cruaud, Bertrand Theulot, Benoît Le Tallec, Florence Proux, Xia Wu, Elizaveta Novikova, Stefan Engelen, Arnaud Lemainque, Benjamin Audit, Olivier Hyrien

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Genome-wide mapping of individual replication fork velocities using nanopore sequencing by Bertrand Theulot, Laurent Lacroix, Jean-Michel Arbona, Gael A. Millot, Etienne Jean, Corinne Cruaud, Jade Pellet, Florence Proux, Magali Hennion, Stefan Engelen, Arnaud Lemainque, Benjamin Audit, Olivier Hyrien, Benoît Le Tallec

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VarGoats project: a dataset of 1159 whole-genome sequences to dissect Capra hircus global diversity by Laure Denoyelle, Estelle Talouarn, Philippe Bardou, Licia Colli, Adriana Alberti, Coralie Danchin, Marcello Del Corvo, Stéfan Engelen, Céline Orvain, Isabelle Palhière, Rachel Rupp, Julien Sarry, Mazdak Salavati, Marcel Amills, Emily Clark, Paola Crepaldi, Thomas Faraut, Clet Wandui Masiga, François Pompanon, Benjamin D. Rosen, Alessandra Stella, Curtis P. Van Tassell, Gwenola Tosser-Klopp, The VarGoats Consortium

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Convergent genomic signatures of domestication in sheep and goats by Florian J. Alberto, Frédéric Boyer, Pablo Orozco-terWengel, Ian Streeter, Bertrand Servin, Pierre de Villemereuil, Badr Benjelloun, Pablo Librado, Filippo Biscarini, Licia Colli, Mario Barbato, Wahid Zamani, Adriana Alberti, Stefan Engelen, Alessandra Stella, Stéphane Joost, Paolo Ajmone-Marsan, Riccardo Negrini, Ludovic Orlando, Hamid Reza Rezaei, Saeid Naderi, Laura Clarke, Paul Flicek, Patrick Wincker, Eric Coissac, James Kijas, Gwenola Tosser-Klopp, Abdelkader Chikhi, Michael W. Bruford, Pierre Taberlet, François Pompanon

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A global ocean atlas of eukaryotic genes by Quentin Carradec, Eric Pelletier, Corinne Da Silva, Adriana Alberti, Yoann Seeleuthner, Romain Blanc-Mathieu, Gipsi Lima-Mendez, Fabio Rocha, Leila Tirichine, Karine Labadie, Amos Kirilovsky, Alexis Bertrand, Stefan Engelen, Mohammed-Amin Madoui, Raphaël Méheust, Julie Poulain, Sarah Romac, Daniel J. Richter, Genki Yoshikawa, Céline Dimier, Stefanie Kandels-Lewis, Marc Picheral, Sarah Searson, Tara Oceans Coordinators, Olivier Jaillon, Jean-Marc Aury, Eric Karsenti, Matthew B. Sullivan, Shinichi Sunagawa, Peer Bork, Fabrice Not, Pascal Hingamp, Jeroen Raes, Lionel Guidi, Hiroyuki Ogata, Colomban de Vargas, Daniele Iudicone, Chris Bowler, Patrick Wincker

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Integrative omics framework for characterization of coral reef ecosystems from the Tara Pacific expedition by Caroline Belser, Julie Poulain, Karine Labadie, Frederick Gavory, Adriana Alberti, Julie Guy, Quentin Carradec, Corinne Cruaud, Corinne Da Silva, Stefan Engelen, Paul Mielle, Aude Perdereau, Gaelle Samson, Shahinaz Gas, Genoscope Technical Team, Christian R. Voolstra, Pierre E. Galand, J. Michel Flores, Benjamin C. C. Hume, Gabriela Perna, Maren Ziegler, Hans-Joachim Ruscheweyh, Emilie Boissin, Sarah Romac, Guillaume Bourdin, Guillaume Iwankow, Clémentine Moulin, David A. Paz García, Sylvain Agostini, Bernard Banaigs, Emmanuel Boss, Chris Bowler, Colomban de Vargas, Eric Douville, Didier Forcioli, Paola Furla, Eric Gilson, Fabien Lombard, Stéphane Pesant, Stéphanie Reynaud, Shinichi Sunagawa, Olivier P. Thomas, Romain Troublé, Rebecca Vega Thurber, Didier Zoccola, Claude Scarpelli, E’ Krame Jacoby, Pedro H. Oliveira, Jean-Marc Aury, Denis Allemand, Serge Planes, Patrick Wincker

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