Why isn’t each cell its own cell type? Diminishing returns of increasing cell type diversity can explain cell type allometry by Stefan Semrau

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Back in 3D—a report on Genome Informatics 2022 by Iman Hajirasouliha, Stefan Semrau

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Dynamics of lineage commitment revealed by single-cell transcriptomics of differentiating embryonic stem cells by Stefan Semrau, Johanna E. Goldmann, Magali Soumillon, Tarjei S. Mikkelsen, Rudolf Jaenisch, Alexander van Oudenaarden

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FuseFISH: Robust Detection of Transcribed Gene Fusions in Single Cells by Stefan Semrau, Nicola Crosetto, Magda Bienko, Marina Boni, Paolo Bernasconi, Roberto Chiarle, Alexander van Oudenaarden

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Phiclust: a clusterability measure for single-cell transcriptomics reveals phenotypic subpopulations by Maria Mircea, Mazène Hochane, Xueying Fan, Susana M. Chuva de Sousa Lopes, Diego Garlaschelli, Stefan Semrau

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Integration of a multi-omics stem cell differentiation dataset using a dynamical model. by Patrick R van den Berg, Noémie M L P Bérenger-Currias, Bogdan Budnik, Nikolai Slavov, Stefan Semrau

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The shapes of elongating gastruloids are consistent with convergent extension driven by a combination of active cell crawling and differential adhesion. by Martijn A de Jong, Esmée Adegeest, Noémie M L P Bérenger-Currias, Maria Mircea, Roeland M H Merks, Stefan Semrau

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A gastruloid model of the interaction between embryonic and extra-embryonic cell types by Noémie MLP Bérenger-Currias, Maria Mircea, Esmée Adegeest, Patrick R van den Berg, Marleen Feliksik, Mazène Hochane, Timon Idema, Sander J Tans, Stefan Semrau

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Single-cell transcriptomics reveals gene expression dynamics of human fetal kidney development. by Mazène Hochane, Patrick R van den Berg, Xueying Fan, Noémie Bérenger-Currias, Esmée Adegeest, Monika Bialecka, Maaike Nieveen, Maarten Menschaart, Susana M Chuva de Sousa Lopes, Stefan Semrau

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BMP-SMAD Signaling Regulates Lineage Priming, but Is Dispensable for Self-Renewal in Mouse Embryonic Stem Cells by Maria Gomes Fernandes, Ruben Dries, Matthias S. Roost, Stefan Semrau, Ana de Melo Bernardo, Richard P. Davis, Ramprasad Ramakrishnan, Karoly Szuhai, Elke Maas, Lieve Umans, Vanesa Abon Escalona, Daniela Salvatori, Dieter Deforce, Wim Van Criekinge, Danny Huylebroeck, Christine Mummery, An Zwijsen, Susana M. Chuva de Sousa Lopes

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