Fast all versus all genotype comparison using DNA/RNA sequencing data: method and workflow by Steven A. Eschrich, Xiaoqing Yu, Jamie K. Teer

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Characteristics and Validation Techniques for PCA-Based Gene-Expression Signatures by Anders E. Berglund, Eric A. Welsh, Steven A. Eschrich

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Integrating Biological Covariates into Gene Expression-Based Predictors of Radiation Sensitivity by Vidya P. Kamath, Javier F. Torres-Roca, Steven A. Eschrich

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Exploiting convergent phenotypes to derive a pan-cancer cisplatin response gene expression signature by Jessica A. Scarborough, Steven A. Eschrich, Javier Torres-Roca, Andrew Dhawan, Jacob G. Scott

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An Analysis of Nectin-4 (PVRL4) in Penile Squamous Cell Carcinoma by G.Daniel Grass, Jad Chahoud, Alex Lopez, Jasreman Dhillon, Steven A. Eschrich, Peter A.S. Johnstone, Philippe E. Spiess

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Evaluating somatic tumor mutation detection without matched normal samples by Jamie K. Teer, Yonghong Zhang, Lu Chen, Eric A. Welsh, W. Douglas Cress, Steven A. Eschrich, Anders E. Berglund

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Differences in Patient Outcomes of Prevalence, Interval, and Screen-Detected Lung Cancers in the CT Arm of the National Lung Screening Trial. by Matthew B Schabath, Pierre P Massion, Zachary J Thompson, Steven A Eschrich, Yoganand Balagurunathan, Dmitry Goldof, Denise R Aberle, Robert J Gillies

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Activity-Based Proteomics Reveals Heterogeneous Kinome and ATP-Binding Proteome Responses to MEK Inhibition in KRAS Mutant Lung Cancer by Jae-Young Kim, Paul A. Stewart, Adam L. Borne, Bin Fang, Eric A. Welsh, Yian Ann Chen, Steven A. Eschrich, John M. Koomen, Eric B. Haura

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A Pilot Proteogenomic Study with Data Integration Identifies MCT1 and GLUT1 as Prognostic Markers in Lung Adenocarcinoma. by Paul A Stewart, Katja Parapatics, Eric A Welsh, André C Müller, Haoyun Cao, Bin Fang, John M Koomen, Steven A Eschrich, Keiryn L Bennett, Eric B Haura

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Metabolomics of primary cutaneous melanoma and matched adjacent extratumoral microenvironment. by Nicholas J Taylor, Irina Gaynanova, Steven A Eschrich, Eric A Welsh, Timothy J Garrett, Chris Beecher, Ritin Sharma, John M Koomen, Keiran S M Smalley, Jane L Messina, Peter A Kanetsky

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Tumor-immune ecosystem dynamics define an individual Radiation Immune Score to predict pan-cancer radiocurability by Juan C.L. Alfonso, G. Daniel Grass, Eric Welsh, Kamran A. Ahmed, Jamie K. Teer, Shari Pilon-Thomas, Louis B. Harrison, John L. Cleveland, James J. Mulé, Steven A. Eschrich, Javier F. Torres-Roca, Heiko Enderling

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Utilizing the genomically adjusted radiation dose (GARD) to personalize adjuvant radiotherapy in triple negative breast cancer managementResearch in context by Kamran A. Ahmed, Casey L. Liveringhouse, Matthew N. Mills, Nicholas B. Figura, G. Daniel Grass, Iman R. Washington, Eleanor E. Harris, Brian J. Czerniecki, Peter W. Blumencranz, Steven A. Eschrich, Jacob G. Scott, Roberto Diaz, Javier F. Torres-Roca

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Epigenome‐wide association study of prostate cancer in African American men identified differentially methylated genes by Anders Berglund, Kosj Yamoah, Steven A. Eschrich, Rana Falahat, James J. Mulé, Sungjune Kim, Jaime Matta, Julie Dutil, Gilberto Ruiz‐Deya, Carmen Ortiz Sanchez, Liang Wang, Hyun Park, Hirendra N. Banerjee, Tamara Lotan, Kathryn Hughes Barry, Ryan M. Putney, Seung Joon Kim, Clement Gwede, Jacob K. Kresovich, Youngchul Kim, Hui‐Yi Lin, Jasreman Dhillon, Ratna Chakrabarti, Jong Y. Park

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Habitat escalated adaptive therapy (HEAT): a phase 2 trial utilizing radiomic habitat-directed and genomic-adjusted radiation dose (GARD) optimization for high-grade soft tissue sa... by Arash O. Naghavi, J. M. Bryant, Youngchul Kim, Joseph Weygand, Gage Redler, Austin J. Sim, Justin Miller, Kaitlyn Coucoules, Lauren Taylor Michael, Warren E. Gloria, George Yang, Stephen A. Rosenberg, Kamran Ahmed, Marilyn M. Bui, Evita B. Henderson-Jackson, Andrew Lee, Caitlin D. Lee, Ricardo J. Gonzalez, Vladimir Feygelman, Steven A. Eschrich, Jacob G. Scott, Javier Torres-Roca, Kujtim Latifi, Nainesh Parikh, James Costello

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Proteogenomic landscape of squamous cell lung cancer by Paul A. Stewart, Eric A. Welsh, Robbert J. C. Slebos, Bin Fang, Victoria Izumi, Matthew Chambers, Guolin Zhang, Ling Cen, Fredrik Pettersson, Yonghong Zhang, Zhihua Chen, Chia-Ho Cheng, Ram Thapa, Zachary Thompson, Katherine M. Fellows, Jewel M. Francis, James J. Saller, Tania Mesa, Chaomei Zhang, Sean Yoder, Gina M. DeNicola, Amer A. Beg, Theresa A. Boyle, Jamie K. Teer, Yian Ann Chen, John M. Koomen, Steven A. Eschrich, Eric B. Haura

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