Optimized Threshold Inference for Partitioning of Clones From High-Throughput B Cell Repertoire Sequencing Data by Nima Nouri, Steven H. Kleinstein, Steven H. Kleinstein

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Getting started in computational immunology. by Steven H Kleinstein

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Somatic hypermutation analysis for improved identification of B cell clonal families from next-generation sequencing data. by Nima Nouri, Steven H Kleinstein

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Predictive overfitting in immunological applications: Pitfalls and solutions by Jeremy P. Gygi, Steven H. Kleinstein, Leying Guan

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Identification of Subject-Specific Immunoglobulin Alleles From Expressed Repertoire Sequencing Data by Daniel Gadala-Maria, Moriah Gidoni, Susanna Marquez, Jason A. Vander Heiden, Justin T. Kos, Corey T. Watson, Kevin C. O'Connor, Kevin C. O'Connor, Gur Yaari, Steven H. Kleinstein, Steven H. Kleinstein, Steven H. Kleinstein

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Local Clonal Diversification and Dissemination of B Lymphocytes in the Human Bronchial Mucosa by Line Ohm-Laursen, Line Ohm-Laursen, Hailong Meng, Jessica Chen, Julian Q. Zhou, Chris J. Corrigan, Chris J. Corrigan, Hannah J. Gould, Hannah J. Gould, Steven H. Kleinstein, Steven H. Kleinstein, Steven H. Kleinstein

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Phylogenetic analysis of migration, differentiation, and class switching in B cells by Kenneth B. Hoehn, Oliver G. Pybus, Steven H. Kleinstein

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Phylogenetic analysis of migration, differentiation, and class switching in B cells. by Kenneth B Hoehn, Oliver G Pybus, Steven H Kleinstein

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Gene set meta-analysis with Quantitative Set Analysis for Gene Expression (QuSAGE). by Hailong Meng, Gur Yaari, Christopher R Bolen, Stefan Avey, Steven H Kleinstein

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A pipeline for the retrieval and extraction of domain-specific information with application to COVID-19 immune signatures by Adam J. H. Newton, David Chartash, Steven H. Kleinstein, Robert A. McDougal

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LinkedImm: a linked data graph database for integrating immunological data by Syed Ahmad Chan Bukhari, Shrikant Pawar, Jeff Mandell, Steven H. Kleinstein, Kei-Hoi Cheung

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Gene expression analysis of forskolin treated basilar papillae identifies microRNA181a as a mediator of proliferation. by Corey S Frucht, Mohamed Uduman, Jamie L Duke, Steven H Kleinstein, Joseph Santos-Sacchi, Dhasakumar S Navaratnam

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Salmonella Typhimurium type III secretion effectors stimulate innate immune responses in cultured epithelial cells. by Vincent M Bruno, Sebastian Hannemann, María Lara-Tejero, Richard A Flavell, Steven H Kleinstein, Jorge E Galán

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The CAIRR Pipeline for Submitting Standards-Compliant B and T Cell Receptor Repertoire Sequencing Studies to the National Center for Biotechnology Information Repositories by Syed Ahmad Chan Bukhari, Martin J. O’Connor, Marcos Martínez-Romero, Attila L. Egyedi, Debra Willrett, John Graybeal, Mark A. Musen, Florian Rubelt, Kei-Hoi Cheung, Kei-Hoi Cheung, Kei-Hoi Cheung, Steven H. Kleinstein, Steven H. Kleinstein

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B Cell Mobilization, Dissemination, Fine Tuning of Local Antigen Specificity and Isotype Selection in Asthma by Line Ohm-Laursen, Line Ohm-Laursen, Hailong Meng, Kenneth B. Hoehn, Nima Nouri, Nima Nouri, Yue Jiang, Chris Clouser, Timothy G. Johnstone, Ron Hause, Balraj S. Sandhar, Balraj S. Sandhar, Nadine E. G. Upton, Nadine E. G. Upton, Elfy B. Chevretton, Raj Lakhani, Chris J. Corrigan, Chris J. Corrigan, Steven H. Kleinstein, Steven H. Kleinstein, Steven H. Kleinstein, Hannah J. Gould, Hannah J. Gould

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Affinity Maturation Is Impaired by Natural Killer Cell Suppression of Germinal Centers by Carolyn E. Rydyznski, Stacey A. Cranert, Julian Q. Zhou, Heping Xu, Steven H. Kleinstein, Harinder Singh, Stephen N. Waggoner

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Human B cell lineages associated with germinal centers following influenza vaccination are measurably evolving by Kenneth B Hoehn, Jackson S Turner, Frederick I Miller, Ruoyi Jiang, Oliver G Pybus, Ali H Ellebedy, Steven H Kleinstein

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AIRR Community Standardized Representations for Annotated Immune Repertoires by Jason Anthony Vander Heiden, Susanna Marquez, Nishanth Marthandan, Syed Ahmad Chan Bukhari, Christian E. Busse, Brian Corrie, Uri Hershberg, Uri Hershberg, Uri Hershberg, Steven H. Kleinstein, Steven H. Kleinstein, Frederick A. Matsen IV, Duncan K. Ralph, Aaron M. Rosenfeld, Chaim A. Schramm, The AIRR Community, Scott Christley, Uri Laserson

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Reporting and connecting cell type names and gating definitions through ontologies by James A. Overton, Randi Vita, Patrick Dunn, Julie G. Burel, Syed Ahmad Chan Bukhari, Kei-Hoi Cheung, Steven H. Kleinstein, Alexander D. Diehl, Bjoern Peters

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CEDAR OnDemand: a browser extension to generate ontology-based scientific metadata by Syed Ahmad Chan Bukhari, Marcos Martínez-Romero, Martin J. O’ Connor, Attila L. Egyedi, Debra Willrett, John Graybeal, Mark A. Musen, Kei-Hoi Cheung, Steven H. Kleinstein

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