A p53 transcriptional signature in primary and metastatic cancers derived using machine learning by Faeze Keshavarz-Rahaghi, Faeze Keshavarz-Rahaghi, Erin Pleasance, Tyler Kolisnik, Tyler Kolisnik, Steven J. M. Jones, Steven J. M. Jones, Steven J. M. Jones

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A survey of genomic properties for the detection of regulatory polymorphisms. by Stephen B Montgomery, Obi L Griffith, Johanna M Schuetz, Angela Brooks-Wilson, Steven J M Jones

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Parent-of-origin detection and chromosome-scale haplotyping using long-read DNA methylation sequencing and Strand-seq by Vahid Akbari, Vincent C.T. Hanlon, Kieran O’Neill, Louis Lefebvre, Kasmintan A. Schrader, Peter M. Lansdorp, Steven J.M. Jones

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Megabase-scale methylation phasing using nanopore long reads and NanoMethPhase by Vahid Akbari, Jean-Michel Garant, Kieran O’Neill, Pawan Pandoh, Richard Moore, Marco A. Marra, Martin Hirst, Steven J. M. Jones

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Complex Autism Spectrum Disorder with Epilepsy, Strabismus and Self-Injurious Behaviors in a Patient with a De Novo Heterozygous <i>POLR2A</i> Variant by Daniel R. Evans, Ying Qiao, Brett Trost, Kristina Calli, Sally Martell, Steven J. M. Jones, Stephen W. Scherer, M. E. Suzanne Lewis

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Population sequencing reveals clonal diversity and ancestral inbreeding in the grapevine cultivar Chardonnay. by Michael J Roach, Daniel L Johnson, Joerg Bohlmann, Hennie J J van Vuuren, Steven J M Jones, Isak S Pretorius, Simon A Schmidt, Anthony R Borneman

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Text-mining clinically relevant cancer biomarkers for curation into the CIViC database by Jake Lever, Martin R. Jones, Arpad M. Danos, Kilannin Krysiak, Melika Bonakdar, Jasleen K. Grewal, Luka Culibrk, Obi L. Griffith, Malachi Griffith, Steven J. M. Jones

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Molecular decoy to the Y-box binding protein-1 suppresses the growth of breast and prostate cancer cells whilst sparing normal cell viability. by Jennifer H Law, Yvonne Li, Karen To, Michelle Wang, Arezoo Astanehe, Karen Lambie, Jaspreet Dhillon, Steven J M Jones, Martin E Gleave, Connie J Eaves, Sandra E Dunn

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Twist1 transcriptional targets in the developing atrio-ventricular canal of the mouse. by Pavle Vrljicak, Rebecca Cullum, Eric Xu, Alex C Y Chang, Elizabeth D Wederell, Mikhail Bilenky, Steven J M Jones, Marco A Marra, Aly Karsan, Pamela A Hoodless

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Tigmint: correcting assembly errors using linked reads from large molecules by Shaun D. Jackman, Lauren Coombe, Justin Chu, Rene L. Warren, Benjamin P. Vandervalk, Sarah Yeo, Zhuyi Xue, Hamid Mohamadi, Joerg Bohlmann, Steven J.M. Jones, Inanc Birol

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Matching methods in precision oncology: An introduction and illustrative example by Deirdre Weymann, Janessa Laskin, Steven J.M. Jones, Howard Lim, Daniel J. Renouf, Robyn Roscoe, Kasmintan A. Schrader, Sophie Sun, Stephen Yip, Marco A. Marra, Dean A. Regier

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A Pan-Cancer Analysis of Alternative Splicing Events Reveals Novel Tumor-Associated Splice Variants of Matriptase by Daryanaz Dargahi, Richard D. Swayze, Leanna Yee, Peter J. Bergqvist, Bradley J. Hedberg, Alireza Heravi-Moussavi, Edie M. Dullaghan, Ryan Dercho, Jianghong An, John S. Babcook, Steven J.M. Jones

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A Pan-Cancer Analysis of Alternative Splicing Events Reveals Novel Tumor-Associated Splice Variants of Matriptase by Daryanaz Dargahi, Richard D. Swayze, Leanna Yee, Peter J. Bergqvist, Bradley J. Hedberg, Alireza Heravi-Moussavi, Edie M. Dullaghan, Ryan Dercho, Jianghong An, John S. Babcook, Steven J.M. Jones

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Rearrangement-mediated cis-regulatory alterations in advanced patient tumors reveal interactions with therapy by Yiqun Zhang, Fengju Chen, Erin Pleasance, Laura Williamson, Cameron J. Grisdale, Emma Titmuss, Janessa Laskin, Steven J.M. Jones, Isidro Cortes-Ciriano, Marco A. Marra, Chad J. Creighton

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TMBur: a distributable tumor mutation burden approach for whole genome sequencing by Emma Titmuss, Richard D. Corbett, Scott Davidson, Sanna Abbasi, Laura M. Williamson, Erin D. Pleasance, Adam Shlien, Daniel J. Renouf, Steven J. M. Jones, Janessa Laskin, Marco A. Marra

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The genome of the forest insect pest <i>Pissodes strobi</i> reveals genome expansion and evidence of a <i>Wolbachia</i> endosymbiont by Kristina K Gagalova, Justin G A Whitehill, Luka Culibrk, Diana Lin, Véronique Lévesque-Tremblay, Christopher I Keeling, Lauren Coombe, Macaire M S Yuen, Inanç Birol, Jörg Bohlmann, Steven J M Jones

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Tumour-suppressor microRNAs regulate ovarian cancer cell physical properties and invasive behaviour by Clara K. Chan, Yinghong Pan, Kendra Nyberg, Marco A. Marra, Emilia L. Lim, Steven J. M. Jones, Dianna Maar, Ewan A. Gibb, Preethi H. Gunaratne, A. Gordon Robertson, Amy C. Rowat

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Assembly of the Complete Sitka Spruce Chloroplast Genome Using 10X Genomics' GemCode Sequencing Data. by Lauren Coombe, René L Warren, Shaun D Jackman, Chen Yang, Benjamin P Vandervalk, Richard A Moore, Stephen Pleasance, Robin J Coope, Joerg Bohlmann, Robert A Holt, Steven J M Jones, Inanc Birol

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A Scalable Strand-Specific Protocol Enabling Full-Length Total RNA Sequencing From Single Cells by Simon Haile, Richard D. Corbett, Veronique G. LeBlanc, Lisa Wei, Stephen Pleasance, Steve Bilobram, Ka Ming Nip, Kirstin Brown, Eva Trinh, Jillian Smith, Diane L. Trinh, Miruna Bala, Eric Chuah, Robin J. N. Coope, Richard A. Moore, Andrew J. Mungall, Karen L. Mungall, Yongjun Zhao, Martin Hirst, Samuel Aparicio, Inanc Birol, Inanc Birol, Steven J. M. Jones, Steven J. M. Jones, Marco A. Marra, Marco A. Marra

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A comparison of parallel pyrosequencing and sanger clone-based sequencing and its impact on the characterization of the genetic diversity of HIV-1. by Binhua Liang, Ma Luo, Joel Scott-Herridge, Christina Semeniuk, Mark Mendoza, Rupert Capina, Brent Sheardown, Hezhao Ji, Joshua Kimani, Blake T Ball, Gary Van Domselaar, Morag Graham, Shane Tyler, Steven J M Jones, Francis A Plummer

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