Identifying quantitatively differential chromosomal compartmentalization changes and their biological significance from Hi-C data using DARIC by Yan Kai, Nan Liu, Stuart H. Orkin, Guo-Cheng Yuan

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CUT&RUNTools: a flexible pipeline for CUT&RUN processing and footprint analysis by Qian Zhu, Nan Liu, Stuart H. Orkin, Guo-Cheng Yuan

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Downregulation of Endothelin Receptor B Contributes to Defective B Cell Lymphopoiesis in Trisomy 21 Pluripotent Stem Cells by Glenn A. MacLean, Jennifer McEldoon, Jialiang Huang, Jeremy Allred, Matthew C. Canver, Stuart. H. Orkin

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Dissecting super-enhancer hierarchy based on chromatin interactions by Jialiang Huang, Kailong Li, Wenqing Cai, Xin Liu, Yuannyu Zhang, Stuart H. Orkin, Jian Xu, Guo-Cheng Yuan

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Polycomb repressive complex 2 regulates skeletal growth by suppressing Wnt and TGF-β signalling by Fatemeh Mirzamohammadi, Garyfallia Papaioannou, Jennifer B. Inloes, Erinn B. Rankin, Huafeng Xie, Ernestina Schipani, Stuart H. Orkin, Tatsuya Kobayashi

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A single cis element maintains repression of the key developmental regulator Gata2. by Jonathan W Snow, Jennifer J Trowbridge, Tohru Fujiwara, Nikla E Emambokus, Jeffrey A Grass, Stuart H Orkin, Emery H Bresnick

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Correction: Corrigendum: LSD1 is essential for oocyte meiotic progression by regulating CDC25B expression in mice by Jeesun Kim, Anup Kumar Singh, Yoko Takata, Kevin Lin, Jianjun Shen, Yue Lu, Marc A. Kerenyi, Stuart H. Orkin, Taiping Chen

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Serum-Based Culture Conditions Provoke Gene Expression Variability in Mouse Embryonic Stem Cells as Revealed by Single-Cell Analysis by Guoji Guo, Luca Pinello, Xiaoping Han, Shujing Lai, Li Shen, Ta-Wei Lin, Keyong Zou, Guo-Cheng Yuan, Stuart H. Orkin

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Multiplexed capture of spatial configuration and temporal dynamics of locus-specific 3D chromatin by biotinylated dCas9 by Xin Liu, Yong Chen, Yuannyu Zhang, Yuxuan Liu, Nan Liu, Giovanni A. Botten, Hui Cao, Stuart H. Orkin, Michael Q. Zhang, Jian Xu

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Bcl11a Deficiency Leads to Hematopoietic Stem Cell Defects with an Aging-like Phenotype by Sidinh Luc, Jialiang Huang, Jennifer L. McEldoon, Ece Somuncular, Dan Li, Claire Rhodes, Shahan Mamoor, Serena Hou, Jian Xu, Stuart H. Orkin

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Matrin3 mediates differentiation through stabilizing chromatin loop-domain interactions and YY1 mediated enhancer-promoter interactions by Tianxin Liu, Qian Zhu, Yan Kai, Trevor Bingham, Stacy Wang, Hye Ji Cha, Stuti Mehta, Thorsten M. Schlaeger, Guo-Cheng Yuan, Stuart H. Orkin

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Histone demethylase Lsd1 represses hematopoietic stem and progenitor cell signatures during blood cell maturation by Marc A Kerenyi, Zhen Shao, Yu-Jung Hsu, Guoji Guo, Sidinh Luc, Kassandra O'Brien, Yuko Fujiwara, Cong Peng, Minh Nguyen, Stuart H Orkin

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Inner nuclear protein Matrin-3 coordinates cell differentiation by stabilizing chromatin architecture by Hye Ji Cha, Özgün Uyan, Yan Kai, Tianxin Liu, Qian Zhu, Zuzana Tothova, Giovanni A. Botten, Jian Xu, Guo-Cheng Yuan, Job Dekker, Stuart H. Orkin

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Yap1 safeguards mouse embryonic stem cells from excessive apoptosis during differentiation by Lucy LeBlanc, Bum-Kyu Lee, Andy C Yu, Mijeong Kim, Aparna V Kambhampati, Shannon M Dupont, Davide Seruggia, Byoung U Ryu, Stuart H Orkin, Jonghwan Kim

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Mapping the evolving landscape of super-enhancers during cell differentiation by Yan Kai, Bin E. Li, Ming Zhu, Grace Y. Li, Fei Chen, Yingli Han, Hye Ji Cha, Stuart H. Orkin, Wenqing Cai, Jialiang Huang, Guo-Cheng Yuan

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Ezh2 Controls an Early Hematopoietic Program and Growth and Survival Signaling in Early T Cell Precursor Acute Lymphoblastic Leukemia by Etienne Danis, Taylor Yamauchi, Kristen Echanique, Xi Zhang, Jessica N. Haladyna, Simone S. Riedel, Nan Zhu, Huafeng Xie, Stuart H. Orkin, Scott A. Armstrong, Kathrin M. Bernt, Tobias Neff

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Gene correction of HAX1 reversed Kostmann disease phenotype in patient-specific induced pluripotent stem cells by Erik Pittermann, Nico Lachmann, Glenn MacLean, Stephan Emmrich, Mania Ackermann, Gudrun Göhring, Brigitte Schlegelberger, Karl Welte, Axel Schambach, Dirk Heckl, Stuart H. Orkin, Tobias Cantz, Jan-Henning Klusmann

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Single-Cell Transcript Profiles Reveal Multilineage Priming in Early Progenitors Derived from Lgr5+ Intestinal Stem Cells by Tae-Hee Kim, Assieh Saadatpour, Guoji Guo, Madhurima Saxena, Alessia Cavazza, Niyati Desai, Unmesh Jadhav, Lan Jiang, Miguel N. Rivera, Stuart H. Orkin, Guo-Cheng Yuan, Ramesh A. Shivdasani

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Indispensable epigenetic control of thymic epithelial cell development and function by polycomb repressive complex 2 by Thomas Barthlott, Adam E. Handel, Hong Ying Teh, Rushika C. Wirasinha, Katrin Hafen, Saulius Žuklys, Benoit Roch, Stuart H. Orkin, Jean-Pierre de Villartay, Stephen R. Daley, Georg A. Holländer

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Role of PDGFRA+ cells and a CD55+ PDGFRALo fraction in the gastric mesenchymal niche by Elisa Manieri, Guodong Tie, Ermanno Malagola, Davide Seruggia, Shariq Madha, Adrianna Maglieri, Kun Huang, Yuko Fujiwara, Kevin Zhang, Stuart H. Orkin, Timothy C. Wang, Ruiyang He, Neil McCarthy, Ramesh A. Shivdasani

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