Signatures Beyond Oncogenic Mutations in Cell-Free DNA Sequencing for Non-Invasive, Early Detection of Cancer by Subhajyoti De

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Cell-free nucleic acid fragmentomics: A non-invasive window into cellular epigenomes by Ahmad Salman Sirajee, Debajyoti Kabiraj, Subhajyoti De

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Inference on spatial heterogeneity in tumor microenvironment using spatial transcriptomics data by Antara Biswas, Bassel Ghaddar, Gregory Riedlinger, Subhajyoti De

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Histone modifications are associated with transcript isoform diversity in normal and cancer cells. by Ondrej Podlaha, Subhajyoti De, Mithat Gonen, Franziska Michor

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Patterns of Somatically Acquired Amplifications and Deletions in Apparently Normal Tissues of Ovarian Cancer Patients by Leila Aghili, Jasmine Foo, James DeGregori, Subhajyoti De

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Transcriptional state dynamics lead to heterogeneity and adaptive tumor evolution in urothelial bladder carcinoma by Antara Biswas, Sarthak Sahoo, Gregory M. Riedlinger, Saum Ghodoussipour, Mohit K. Jolly, Subhajyoti De

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MicroRNAs down-regulate homologous recombination in the G1 phase of cycling cells to maintain genomic stability by Young Eun Choi, Yunfeng Pan, Eunmi Park, Panagiotis Konstantinopoulos, Subhajyoti De, Alan D'Andrea, Dipanjan Chowdhury

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Whole genome sequencing highlights genetic changes associated with laboratory domestication of C. elegans. by Katherine P Weber, Subhajyoti De, Iwanka Kozarewa, Daniel J Turner, M Madan Babu, Mario de Bono

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Genomic characterization of malignant pleural mesothelioma and associated clinical outcomes by Paul Markowitz, Malini Patel, Roman Groisberg, Joseph Aisner, Salma K. Jabbour, Subhajyoti De, Shridar Ganesan, Jyoti Malhotra

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Editorial: Genomic Colocalization and Enrichment Analyses by Chakravarthi Kanduri, Geir Kjetil Sandve, Eivind Hovig, Eivind Hovig, Subhajyoti De, Ryan M. Layer, Ryan M. Layer

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Non-Genetic Intra-Tumor Heterogeneity Is a Major Predictor of Phenotypic Heterogeneity and Ongoing Evolutionary Dynamics in Lung Tumors by Anchal Sharma, Elise Merritt, Xiaoju Hu, Angelique Cruz, Chuan Jiang, Halle Sarkodie, Zhan Zhou, Jyoti Malhotra, Gregory M. Riedlinger, Subhajyoti De

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Loss of the BRCA1-PALB2 interaction accelerates p53-associated tumor development in mice by Amar H. Mahdi, Yanying Huo, Ying Chen, Pier Selenica, Anchal Sharma, Elise Merritt, Nicola Barnard, Chang Chan, Shridar Ganesan, Jorge S. Reis-Filho, Britta Weigelt, Subhajyoti De, Bing Xia

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Lipogenic enzyme FASN promotes mutant p53 accumulation and gain-of-function through palmitoylation by Juan Liu, Yiyun Shen, Jie Liu, Dandan Xu, Chun-Yuan Chang, Jianming Wang, Jason Zhou, Bruce G. Haffty, Lanjing Zhang, Jill Bargonetti, Subhajyoti De, Wenwei Hu, Zhaohui Feng

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Large extracellular vesicles carry most of the tumour DNA circulating in prostate cancer patient plasma by Tatyana Vagner, Cristiana Spinelli, Valentina R. Minciacchi, Leonora Balaj, Mandana Zandian, Andrew Conley, Andries Zijlstra, Michael R. Freeman, Francesca Demichelis, Subhajyoti De, Edwin M. Posadas, Hisashi Tanaka, Dolores Di Vizio

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Aberration in DNA methylation in B-cell lymphomas has a complex origin and increases with disease severity. by Subhajyoti De, Rita Shaknovich, Markus Riester, Olivier Elemento, Huimin Geng, Matthias Kormaksson, Yanwen Jiang, Bruce Woolcock, Nathalie Johnson, Jose M Polo, Leandro Cerchietti, Randy D Gascoyne, Ari Melnick, Franziska Michor

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Association between <i>SMAD4</i> Mutations and <i>GATA6</i> Expression in Paired Pancreatic Ductal Adenocarcinoma Tumor Specimens: Data from Two Independent Molecularly-Characteriz... by Joshua D. Greendyk, William E. Allen, H. Richard Alexander, Toni Beninato, Mariam F. Eskander, Miral S. Grandhi, Timothy J. Kennedy, Russell C. Langan, Jason C. Maggi, Subhajyoti De, Colin M. Court, Brett L. Ecker

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Identification of regulators of poly-ADP-ribose polymerase inhibitor response through complementary CRISPR knockout and activation screens by Kristen E. Clements, Emily M. Schleicher, Tanay Thakar, Anastasia Hale, Ashna Dhoonmoon, Nathanial J. Tolman, Anchal Sharma, Xinwen Liang, Yuka Imamura Kawasawa, Claudia M. Nicolae, Hong-Gang Wang, Subhajyoti De, George-Lucian Moldovan

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Netrin-1 feedforward mechanism promotes pancreatic cancer liver metastasis via hepatic stellate cell activation, retinoid, and ELF3 signaling by Crissy Dudgeon, Anthony Casabianca, Chris Harris, Charline Ogier, Mélanie Bellina, Stephany Fiore, Agnes Bernet, Benjamin Ducarouge, David Goldschneider, Xiaoyang Su, Jason Pitarresi, Aram Hezel, Subhajyoti De, Wade Narrow, Fady Soliman, Cory Shields, Debora Barbosa Vendramini-Costa, Orjola Prela, Lan Wang, Igor Astsaturov, Patrick Mehlen, Darren R. Carpizo

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Integrated metabolic and genetic analysis reveals distinct features of human differentiated thyroid cancer by Eduardo Cararo Lopes, Akshada Sawant, Dirk Moore, Hua Ke, Fuqian Shi, Saurabh Laddha, Ying Chen, Anchal Sharma, Jake Naumann, Jessie Yanxiang Guo, Maria Gomez, Maria Ibrahim, Tracey L. Smith, Gregory M. Riedlinger, Edmund C. Lattime, Stanley Trooskin, Shridar Ganesan, Xiaoyang Su, Renata Pasqualini, Wadih Arap, Subhajyoti De, Chang S. Chan, Eileen White

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The radiogenomic and spatiogenomic landscapes of glioblastoma and their relationship to oncogenic drivers by Anahita Fathi Kazerooni, Hamed Akbari, Xiaoju Hu, Vikas Bommineni, Dimitris Grigoriadis, Erik Toorens, Chiharu Sako, Elizabeth Mamourian, Dominique Ballinger, Robyn Sussman, Ashish Singh, Ioannis I. Verginadis, Nadia Dahmane, Constantinos Koumenis, Zev A. Binder, Stephen J. Bagley, Suyash Mohan, Artemis Hatzigeorgiou, Donald M. O’Rourke, Tapan Ganguly, Subhajyoti De, Spyridon Bakas, MacLean P. Nasrallah, Christos Davatzikos

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