Coarse-grained modelling of nucleic acids -н Sulc, P

Phenotype bias determines how natural RNA structures occupy the morphospace of all possible shapes -н Dingle, K, Ghaddar, F, Šulc, P, Louis, AA

Designing the self-assembly of arbitrary shapes using minimal complexity building blocks -н Bohlin, J, Turberfield, AJ, Louis, AA, Šulc, P

Simulating a burnt-bridges DNA motor with a coarse-grained DNA model -н Šulc, P, Ouldridge, T, Romano, F, Doye, J, Louis, A

A nucleotide-level coarse-grained model of RNA -н Šulc, P, Romano, F, Ouldridge, T, Doye, J, Louis, A

Coarse-grained modeling of DNA and DNA nanotechnology -н Ouldridge, T, Sulc, P, Romano, F, Louis, A, Doye, J

Simulating a burnt-bridges DNA motor with a coarse-grained DNA model -н Sulc, P, Ouldridge, T, Romano, F, Doye, J, Louis, A

DNA hybridization kinetics: zippering, internal displacement and sequence dependence. -н Ouldridge, T, Sulc, P, Romano, F, Doye, J, Louis, A

Modelling toehold-mediated RNA strand displacement -н Šulc, P, Ouldridge, TE, Romano, F, Doye, JPK, Louis, AA

Coarse-grained modelling of DNA-RNA hybrids -н Ratajczyk, EJ, Šulc, P, Turberfield, AJ, Doye, JPK, Louis, AA

Coarse-grained modelling of supercoiled RNA -н Matek, C, Šulc, P, Randisi, F, Doye, J, Louis, A

Sequence-dependent thermodynamics of a coarse-grained DNA model. -н Šulc, P, Romano, F, Ouldridge, T, Rovigatti, L, Doye, J, Louis, A

DNA hairpins primarily promote duplex melting rather than inhibiting hybridization -н Schreck, J, Ouldridge, T, Romano, F, Sulc, P, Shaw, L, Louis, A, Doye, J

On the biophysics and kinetics of toehold-mediated DNA strand displacement -н Srinivas, N, Ouldridge, T, Sulc, P, Schaeffer, J, Yurke, B, Louis, A, Doye, J, Winfree, E

TacoxDNA: A user-friendly web server for simulations of complex DNA structures, from single strands to origami -н Suma, A, Poppleton, E, Matthies, M, Šulc, P, Romano, F, Louis, AA, Doye, JPK, Micheletti, C, Rovigatti, L

Coarse-graining DNA for simulations of DNA nanotechnology. -н Doye, J, Ouldridge, T, Louis, A, Romano, F, Šulc, P, Matek, C, Snodin, B, Rovigatti, L, Schreck, J, Harrison, R, Smith, W

Introducing improved structural properties and salt dependence into a coarse-grained model of DNA. -н Snodin, B, Randisi, F, Mosayebi, M, Šulc, P, Schreck, J, Romano, F, Ouldridge, T, Tsukanov, R, Nir, E, Louis, A, Doye, J