Microbiome in Eosinophilic Esophagitis—Metagenomic, Metatranscriptomic, and Metabolomic Changes: A Systematic Review by Jordan D. Busing, Matthew Buendia, Yash Choksi, Yash Choksi, Girish Hiremath, Suman R. Das, Suman R. Das

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Cysteinyl-tRNA deacylation can be uncoupled from protein synthesis. by Alexandre David, Suman R Das, James S Gibbs, Jack R Bennink, Jonathan W Yewdell

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Glycosylation focuses sequence variation in the influenza A virus H1 hemagglutinin globular domain. by Suman R Das, Pere Puigbò, Scott E Hensley, Darrell E Hurt, Jack R Bennink, Jonathan W Yewdell

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Influenza A virus hemagglutinin antibody escape promotes neuraminidase antigenic variation and drug resistance. by Scott E Hensley, Suman R Das, James S Gibbs, Adam L Bailey, Loren M Schmidt, Jack R Bennink, Jonathan W Yewdell

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Severe COVID-19 Is Associated With an Altered Upper Respiratory Tract Microbiome by Meghan H. Shilts, Christian Rosas-Salazar, Britton A. Strickland, Britton A. Strickland, Kyle S. Kimura, Mohammad Asad, Esha Sehanobish, Michael H. Freeman, Bronson C. Wessinger, Bronson C. Wessinger, Veerain Gupta, Veerain Gupta, Hunter M. Brown, Helen H. Boone, Viraj Patel, Mali Barbi, Danielle Bottalico, Meaghan O’Neill, Nadeem Akbar, Seesandra V. Rajagopala, Simon Mallal, Elizabeth Phillips, Justin H. Turner, Elina Jerschow, Suman R. Das, Suman R. Das, Suman R. Das

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Species-specific transcriptomic changes upon respiratory syncytial virus infection in cotton rats by Britton A. Strickland, Seesandra V. Rajagopala, Arash Kamali, Meghan H. Shilts, Suman B. Pakala, Marina S. Boukhvalova, Shibu Yooseph, Jorge C. G. Blanco, Suman R. Das

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Contemporary Circulating Enterovirus D68 Strains Have Acquired the Capacity for Viral Entry and Replication in Human Neuronal Cells by David M. Brown, Alison M. Hixon, Lauren M. Oldfield, Yun Zhang, Mark Novotny, Wei Wang, Suman R. Das, Reed S. Shabman, Kenneth L. Tyler, Richard H. Scheuermann

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Genomic analysis of serologically untypable human enteroviruses in Taiwan by Yeh-Sheng Chien, Shu-Ting Luo, Kuo-Chien Tsao, Yhu-Chering Huang, Wan-Yu Chung, Yu-Chieh Liao, Yi Tan, Suman R. Das, Min-Shi Lee

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Enterovirus D-68 Infection, Prophylaxis, and Vaccination in a Novel Permissive Animal Model, the Cotton Rat (Sigmodon hispidus). by Mira C Patel, Wei Wang, Lioubov M Pletneva, Seesandra V Rajagopala, Yi Tan, Tina V Hartert, Marina S Boukhvalova, Stefanie N Vogel, Suman R Das, Jorge C G Blanco

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Dietary Arginine Regulates Severity of Experimental Colitis and Affects the Colonic Microbiome by Kshipra Singh, Kshipra Singh, Alain P. Gobert, Alain P. Gobert, Lori A. Coburn, Lori A. Coburn, Lori A. Coburn, Daniel P. Barry, Margaret Allaman, Mohammad Asim, Paula B. Luis, Paula B. Luis, Claus Schneider, Claus Schneider, Claus Schneider, Ginger L. Milne, Helen H. Boone, Meghan H. Shilts, M. Kay Washington, Suman R. Das, Suman R. Das, M. Blanca Piazuelo, Keith T. Wilson, Keith T. Wilson, Keith T. Wilson, Keith T. Wilson

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Spatial and temporal expansions of Eastern equine encephalitis virus and phylogenetic groups isolated from mosquitoes and mammalian cases in New York State from 2013 to 2019 by JoAnne Oliver, Yi Tan, Jamie D. Haight, Keith J. Tober, Wayne K. Gall, Steven D. Zink, Laura D. Kramer, Scott R. Campbell, John J. Howard, Suman R. Das, James A. Sherwood

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Antibody Pressure by a Human Monoclonal Antibody Targeting the 2009 Pandemic H1N1 Virus Hemagglutinin Drives the Emergence of a Virus with Increased Virulence in Mice by Christopher D. O’Donnell, Leatrice Vogel, Amber Wright, Suman R. Das, Jens Wrammert, Gui-Mei Li, Megan McCausland, Nai-Ying Zheng, Jonathan W. Yewdell, Rafi Ahmed, Patrick C. Wilson, Kanta Subbarao

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Extending the Environmental influences on Child Health Outcomes (ECHO) Cohort through 2030: Rationale and study protocol by Courtney K. Blackwell, David Cella, Linda Adair, José F. Cordero, Suman R. Das, Amy J. Elliott, Alison E. Hipwell, Lisa P. Jacobson, Jenae M. Neiderhiser, Joseph B. Stanford, Rosalind J. Wright, Richard Gershon

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Microbial community structure and composition is associated with host species and sex in Sigmodon cotton rats by Britton A. Strickland, Mira C. Patel, Meghan H. Shilts, Helen H. Boone, Arash Kamali, Wei Zhang, Daniel Stylos, Marina S. Boukhvalova, Christian Rosas-Salazar, Shibu Yooseph, Seesandra V. Rajagopala, Jorge C. G. Blanco, Suman R. Das

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Extending the Environmental influences on Child Health Outcomes (ECHO) Cohort through 2030: Rationale and study protocol. by Courtney K Blackwell, David Cella, Linda Adair, José F Cordero, Suman R Das, Amy J Elliott, Alison E Hipwell, Lisa P Jacobson, Jenae M Neiderhiser, Joseph B Stanford, Rosalind J Wright, Richard Gershon, ECHO Cohort Consortium

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Distinct mucosal microbial communities in infants with surgical necrotizing enterocolitis correlate with age and antibiotic exposure. by Joann Romano-Keeler, Meghan H Shilts, Andrey Tovchigrechko, Chunlin Wang, Robert M Brucker, Daniel J Moore, Christopher Fonnesbeck, Shufang Meng, Hernan Correa, Harold N Lovvorn, Yi-Wei Tang, Lora Hooper, Seth R Bordenstein, Suman R Das, Jörn-Hendrik Weitkamp

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Reassortment of Influenza A Viruses in Wild Birds in Alaska before H5 Clade 2.3.4.4 Outbreaks by Nichola J. Hill, Islam T.M. Hussein, Kimberly R. Davis, Eric J. Ma, Timothy J. Spivey, Andrew M. Ramey, Wendy Blay Puryear, Suman R. Das, Rebecca A. Halpin, Xudong Lin, Nadia B. Fedorova, David L. Suarez, Walter M. Boyce, Jonathan A. Runstadler

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The effective rate of influenza reassortment is limited during human infection. by Ashley Sobel Leonard, Micah T McClain, Gavin J D Smith, David E Wentworth, Rebecca A Halpin, Xudong Lin, Amy Ransier, Timothy B Stockwell, Suman R Das, Anthony S Gilbert, Rob Lambkin-Williams, Geoffrey S Ginsburg, Christopher W Woods, Katia Koelle, Christopher J R Illingworth

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Microbiome disturbance and resilience dynamics of the upper respiratory tract during influenza A virus infection by Drishti Kaul, Raveen Rathnasinghe, Marcela Ferres, Gene S. Tan, Aldo Barrera, Brett E. Pickett, Barbara A. Methe, Suman R. Das, Isolda Budnik, Rebecca A. Halpin, David Wentworth, Mirco Schmolke, Ignacio Mena, Randy A. Albrecht, Indresh Singh, Karen E. Nelson, Adolfo García-Sastre, Chris L. Dupont, Rafael A. Medina

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Author Correction: Microbiome disturbance and resilience dynamics of the upper respiratory tract during influenza A virus infection by Drishti Kaul, Raveen Rathnasinghe, Marcela Ferres, Gene S. Tan, Aldo Barrera, Brett E. Pickett, Barbara A. Methe, Suman R. Das, Isolda Budnik, Rebecca A. Halpin, David Wentworth, Mirco Schmolke, Ignacio Mena, Randy A. Albrecht, Indresh Singh, Karen E. Nelson, Adolfo García-Sastre, Chris L. Dupont, Rafael A. Medina

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