An Eigenvalue test for spatial principal component analysis by V. Montano, T. Jombart

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Discriminant analysis of principal components: a new method for the analysis of genetically structured populations by Balloux François, Devillard Sébastien, Jombart Thibaut

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Assessing the feasibility of Phase 3 vaccine trials against Marburg Virus Disease: A modelling study by George Y. Qian, Thibaut Jombart, W. John Edmunds

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Bayesian inference of transmission chains using timing of symptoms, pathogen genomes and contact data. by Finlay Campbell, Anne Cori, Neil Ferguson, Thibaut Jombart

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Analysis of global routine immunisation coverage shows disruption and stagnation during the first two-years of the COVID-19 pandemic with tentative recovery in 2022 by Beth Evans, Olivia Keiser, Laurent Kaiser, Thibaut Jombart

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treespace: Statistical exploration of landscapes of phylogenetic trees. by Jombart, T, Kendall, M, Almagro-Garcia, J, Colijn, C

Consensus genetic structuring and typological value of markers using multiple co-inertia analysis by Moazami-Goudarzi Katayoun, Dufour Anne-Béatrice, Jombart Thibaut, Laloë Denis

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When are pathogen genome sequences informative of transmission events? by Finlay Campbell, Camilla Strang, Neil Ferguson, Anne Cori, Thibaut Jombart

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Epicontacts: Handling, visualisation and analysis of epidemiological contacts by Nagraj, V, Randhawa, N, Campbell, F, Crellen, T, Sudre, B, Jombart, T

A mathematical model of Marburg virus disease outbreaks and the potential role of vaccination in control by George Y. Qian, W. John Edmunds, Daniel G. Bausch, Thibaut Jombart

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A graph-based evidence synthesis approach to detecting outbreak clusters: An application to dog rabies. by Anne Cori, Pierre Nouvellet, Tini Garske, Hervé Bourhy, Emmanuel Nakouné, Thibaut Jombart

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outbreaker2: a modular platform for outbreak reconstruction by Finlay Campbell, Xavier Didelot, Rich Fitzjohn, Neil Ferguson, Anne Cori, Thibaut Jombart

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Bayesian reconstruction of disease outbreaks by combining epidemiologic and genomic data. by Thibaut Jombart, Anne Cori, Xavier Didelot, Simon Cauchemez, Christophe Fraser, Neil Ferguson

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epicontacts: Handling, visualisation and analysis of epidemiological contacts [version 2; peer review: 2 approved, 1 approved with reservations] by VP Nagraj, Nistara Randhawa, Finlay Campbell, Thomas Crellen, Bertrand Sudre, Thibaut Jombart

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Epidemic curves made easy using the R package incidence [version 1; peer review: 1 approved, 2 approved with reservations] by Zhian N. Kamvar, Jun Cai, Juliet R.C. Pulliam, Jakob Schumacher, Thibaut Jombart

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EpiJSON: A unified data-format for epidemiology by Thomas J.R. Finnie, Andy South, Ana Bento, Ellie Sherrard-Smith, Thibaut Jombart

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Analysis of temporal trends in potential COVID-19 cases reported through NHS Pathways England by Quentin J. Leclerc, Emily S. Nightingale, Sam Abbott, CMMID COVID-19 Working Group, Thibaut Jombart

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epiflows: an R package for risk assessment of travel-related spread of disease. by Moraga, P, Dorigatti, I, Kamvar, ZN, Piatkowski, P, Toikkanen, SE, Nagraj, VP, Donnelly, CA, Jombart, T

Nonrandom Distribution of Azole Resistance across the Global Population of <named-content content-type="genus-species">Aspergillus fumigatus</named-content> by Thomas R. Sewell, Jianing Zhu, Johanna Rhodes, Ferry Hagen, Jacques F. Meis, Matthew C. Fisher, Thibaut Jombart

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epiflows: an R package for risk assessment of travel-related spread of disease [version 3; peer review: 2 approved] by Paula Moraga, Ilaria Dorigatti, Zhian N. Kamvar, Pawel Piatkowski, Salla E. Toikkanen, VP Nagraj, Christl A. Donnelly, Thibaut Jombart

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