Influence of the initial microbiota on eggplant shibazuke pickle and eggplant juice fermentation by Kazunori Sawada, Takuji Yamada

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Probabilistic model based on circular statistics for quantifying coverage depth dynamics originating from DNA replication by Shinya Suzuki, Takuji Yamada

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Linking the spatiotemporal distribution of static stress drops to source faults in a fluid-driven earthquake swarm, northeastern Noto Peninsula, central Japan by Mitsuteru Fukuoka, Yoshihiro Hiramatsu, Takuji Yamada

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QNetDiff: a quantitative measurement of network rewiring by Shota Nose, Hirotsugu Shiroma, Takuji Yamada, Yushi Uno

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The effects of vegetable pickling conditions on the dynamics of microbiota and metabolites by Kazunori Sawada, Hitoshi Koyano, Nozomi Yamamoto, Takuji Yamada

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Probiotic responder identification in cross-over trials for constipation using a Bayesian statistical model considering lags between intake and effect periods by Shion Hosoda, Yuichiro Nishimoto, Yohsuke Yamauchi, Takuji Yamada, Michiaki Hamada

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Toward molecular trait‐based ecology through integration of biogeochemical, geographical and metagenomic data by Jeroen Raes, Ivica Letunic, Takuji Yamada, Lars Juhl Jensen, Peer Bork

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Gluconobacter dominates the gut microbiome of the Asian palm civet Paradoxurus hermaphroditus that produces kopi luwak by Hikaru Watanabe, Chong Han Ng, Vachiranee Limviphuvadh, Shinya Suzuki, Takuji Yamada

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Kale improves bowel movements in constipated women and affects some intestinal microbes and metabolites: a pilot study by Yuichiro Nishimoto, Felix Salim, Felix Salim, Yohsuke Yamauchi, Yuka Mori, Shinnosuke Murakami, Asahi Suzuki, Shinji Fukuda, Shinji Fukuda, Shinji Fukuda, Shinji Fukuda, Shinji Fukuda, Takuji Yamada, Takuji Yamada

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Leveraging explainable AI for gut microbiome-based colorectal cancer classification by Ryza Rynazal, Kota Fujisawa, Hirotsugu Shiroma, Felix Salim, Sayaka Mizutani, Satoshi Shiba, Shinichi Yachida, Takuji Yamada

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Succinic semialdehyde derived from the gut microbiota can promote the proliferation of adult T-cell leukemia/lymphoma cells by Nodoka Chiba, Shinya Suzuki, Daniel Enriquez-Vera, Atae Utsunomiya, Yoko Kubuki, Tomonori Hidaka, Kazuya Shimoda, Shingo Nakahata, Takuji Yamada, Kazuhiro Morishita

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Prediction and identification of sequences coding for orphan enzymes using genomic and metagenomic neighbours by Takuji Yamada, Alison S Waller, Jeroen Raes, Aleksej Zelezniak, Nadia Perchat, Alain Perret, Marcel Salanoubat, Kiran R Patil, Jean Weissenbach, Peer Bork

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Fusobacterium species are distinctly associated with patients with Lynch syndrome colorectal cancer by Felix Salim, Sayaka Mizutani, Satoshi Shiba, Hiroyuki Takamaru, Masayoshi Yamada, Takeshi Nakajima, Tatsuo Yachida, Tomoyoshi Soga, Yutaka Saito, Shinji Fukuda, Shinichi Yachida, Takuji Yamada

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Integrated gut microbiome and metabolome analyses identified fecal biomarkers for bowel movement regulation by Bifidobacterium longum BB536 supplementation: A RCT by Yuya Nakamura, Shinya Suzuki, Shinnosuke Murakami, Yuichiro Nishimoto, Koichi Higashi, Naoki Watarai, Junpei Umetsu, Chiharu Ishii, Yutaro Ito, Yuka Mori, Mamiko Kohno, Takuji Yamada, Shinji Fukuda

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High body temperature increases gut microbiota-dependent host resistance to influenza A virus and SARS-CoV-2 infection by Minami Nagai, Miyu Moriyama, Chiharu Ishii, Hirotake Mori, Hikaru Watanabe, Taku Nakahara, Takuji Yamada, Dai Ishikawa, Takamasa Ishikawa, Akiyoshi Hirayama, Ikuo Kimura, Akihito Nagahara, Toshio Naito, Shinji Fukuda, Takeshi Ichinohe

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Dysbiosis of oral microbiome persists after dental treatment-induced remission of periodontal disease and dental caries by Kazuma Yama, Yuichiro Nishimoto, Kota Kumagai, Ryutaro Jo, Minori Harada, Yuki Maruyama, Yuto Aita, Narumi Fujii, Takuya Inokuchi, Ryosuke Kawamata, Misato Sako, Yuko Ichiba, Kota Tsutsumi, Mitsuo Kimura, Shinnosuke Murakami, Yasushi Kakizawa, Takashi Kumagai, Takuji Yamada, Shinji Fukuda

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Brazilian green propolis improves gut microbiota dysbiosis and protects against sarcopenic obesity by Takuro Okamura, Masahide Hamaguchi, Ryo Bamba, Hanako Nakajima, Yuta Yoshimura, Tomonori Kimura, Yoshitaka Hashimoto, Saori Majima, Takafumi Senmaru, Emi Ushigome, Naoko Nakanishi, Mai Asano, Masahiro Yamazaki, Yuichiro Nishimoto, Takuji Yamada, Chizuru Fujikura, Takashi Asama, Nobuaki Okumura, Hiroshi Takakuwa, Ryoichi Sasano, Michiaki Fukui

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Potential of fecal microbiota for early‐stage detection of colorectal cancer by Georg Zeller, Julien Tap, Anita Y Voigt, Shinichi Sunagawa, Jens Roat Kultima, Paul I Costea, Aurélien Amiot, Jürgen Böhm, Francesco Brunetti, Nina Habermann, Rajna Hercog, Moritz Koch, Alain Luciani, Daniel R Mende, Martin A Schneider, Petra Schrotz‐King, Christophe Tournigand, Jeanne Tran Van Nhieu, Takuji Yamada, Jürgen Zimmermann, Vladimir Benes, Matthias Kloor, Cornelia M Ulrich, Magnus von Knebel Doeberitz, Iradj Sobhani, Peer Bork

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