Genome-Wide Discovery of G-Quadruplexes in Wheat: Distribution and Putative Functional Roles by H. Busra Cagirici, Taner Z. Sen

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Genome-wide discovery of G-quadruplexes in barley by H. Busra Cagirici, Hikmet Budak, Taner Z. Sen

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G4Boost: a machine learning-based tool for quadruplex identification and stability prediction by H. Busra Cagirici, Hikmet Budak, Taner Z. Sen

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PhosBoost: Improved phosphorylation prediction recall using gradient boosting and protein language models by Elly Poretsky, Carson M. Andorf, Taner Z. Sen

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Predicting the binding patterns of hub proteins: a study using yeast protein interaction networks. by Carson M Andorf, Vasant Honavar, Taner Z Sen

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Co-expression pan-network reveals genes involved in complex traits within maize pan-genome by H. Busra Cagirici, Carson M. Andorf, Taner Z. Sen

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Predicting Tissue-Specific mRNA and Protein Abundance in Maize: A Machine Learning Approach by Kyoung Tak Cho, Taner Z. Sen, Carson M. Andorf

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Building a successful international research community through data sharing: The case of the Wheat Information System (WheatIS) [version 1; peer review: 2 approved, 1 approved with... by Taner Z. Sen, Mario Caccamo, David Edwards, Hadi Quesneville

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JBrowse Connect: A server API to connect JBrowse instances and users. by Eric Yao, Robert Buels, Lincoln Stein, Taner Z Sen, Ian Holmes

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GrainGenes: Tools and Content to Assist Breeders Improving Oat Quality by Victoria C. Blake, Charlene P. Wight, Eric Yao, Taner Z. Sen

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Multiple Variant Calling Pipelines in Wheat Whole Exome Sequencing by H. Busra Cagirici, Bala Ani Akpinar, Taner Z. Sen, Hikmet Budak

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Experimental and computational studies of cellulases as bioethanol enzymes by Shrivaishnavi Ranganathan, Sankar Mahesh, Sruthi Suresh, Ayshwarya Nagarajan, Taner Z. Sen, Ragothaman M.Yennamalli

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A clade-specific Arabidopsis gene connects primary metabolism and senescence by Dallas C. Jones, Wenguang Zheng, Sheng Huang, Chuanlong Du, Xuefeng Zhao, Ragothaman M. Yennamalli, Ragothaman M. Yennamalli, Ragothaman M. Yennamalli, Taner Z. Sen, Taner Z. Sen, Dan Nettleton, Eve Syrkin Wurtele, Eve Syrkin Wurtele, Ling Li, Ling Li

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Maize Metabolic Network Construction and Transcriptome Analysis by Marcela K. Monaco, Taner Z. Sen, Palitha D. Dharmawardhana, Liya Ren, Mary Schaeffer, Sushma Naithani, Vindhya Amarasinghe, Jim Thomason, Lisa Harper, Jack Gardiner, Ethalinda K.S. Cannon, Carolyn J. Lawrence, Doreen Ware, Pankaj Jaiswal

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Capturing Wheat Phenotypes at the Genome Level by Babar Hussain, Babar Hussain, Bala A. Akpınar, Michael Alaux, Ahmed M. Algharib, Deepmala Sehgal, Zulfiqar Ali, Gudbjorg I. Aradottir, Jacqueline Batley, Arnaud Bellec, Alison R. Bentley, Halise B. Cagirici, Luigi Cattivelli, Fred Choulet, James Cockram, Francesca Desiderio, Pierre Devaux, Munevver Dogramaci, Gabriel Dorado, Susanne Dreisigacker, David Edwards, Khaoula El-Hassouni, Kellye Eversole, Tzion Fahima, Melania Figueroa, Sergio Gálvez, Kulvinder S. Gill, Liubov Govta, Alvina Gul, Goetz Hensel, Goetz Hensel, Pilar Hernandez, Leonardo Abdiel Crespo-Herrera, Amir Ibrahim, Benjamin Kilian, Viktor Korzun, Tamar Krugman, Yinghui Li, Shuyu Liu, Amer F. Mahmoud, Alexey Morgounov, Tugdem Muslu, Faiza Naseer, Frank Ordon, Etienne Paux, Dragan Perovic, Gadi V. P. Reddy, Jochen Christoph Reif, Matthew Reynolds, Rajib Roychowdhury, Jackie Rudd, Taner Z. Sen, Sivakumar Sukumaran, Bahar Sogutmaz Ozdemir, Vijay Kumar Tiwari, Naimat Ullah, Turgay Unver, Selami Yazar, Rudi Appels, Hikmet Budak

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