Immunopeptidomics special issue Dahkki Ternette, N, Purcell, AW

Improved prediction of Bovine Leucocyte Antigens (BoLA) presented ligands by use of mass-spectrometry-determined ligand and in vitro binding data Dahkki Nielsen, M, Connelley, T, Ternette, N

Mass spectrometry–based identification of MHC-bound peptides for immunopeptidomics Dahkki Purcell, A, Ramarathinam, S, Ternette, N

Extended analysis identifies drug-specific association of two distinct HLA class II haplotypes for development of immunogenicity to adalimumab and infliximab Dahkki Powell Doherty, RD, Liao, H, Satsangi, JJ, Ternette, N

Direct Identification of Vaccine-Induced HIV-1-Specific MHC Class I Associated Epitopes by Mass Spectrometry Dahkki Ternette, N, Dudek, N, Purcell, A, Kessler, B, Hanke, T

Label-free quantitative proteomics reveals regulation of interferon-induced protein with tetratricopeptide repeats 3 (IFIT3) and 5'-3'-exoribonuclease 2 (XRN2) during respiratory s... Dahkki Ternette, N, Wright, C, Kramer, H, Altun, M, Kessler, B

A quantitative label-free analysis of the extracellular proteome of human supraspinatus tendon reveals damage to the pericellular and elastic fibre niches in torn and aged tissue. Dahkki Hakimi, O, Ternette, N, Murphy, R, Kessler, B, Carr, A

THE PROTEOME OF YOUNG AND HEALTHY HUMAN HAMSTRING Dahkki Hakimi, O, Ternette, N, Murphy, R, Kessler, B, Carr, A

The Choice of HLA-Associated Peptide Enrichment and Purification Strategy Affects Peptide Yields and Creates a Bias in Detected Sequence Repertoire Dahkki Nicastri, A, Liao, H, Muller, J, Purcell, AW, Ternette, N

ATM-Dependent Downregulation of USP7/HAUSP by PPM1G Activates p53 Response to DNA Damage Dahkki Khoronenkova, S, Dianova, I, Ternette, N, Kessler, B, Parsons, J, Dianov, G

ATM-dependent downregulation of USP7/HAUSP by PPM1G activates p53 response to DNA damage. Dahkki Khoronenkova, S, Dianova, I, Ternette, N, Kessler, B, Parsons, J, Dianov, G

Elucidation of the signatures of proteasome-catalysed peptide splicing Dahkki Paes, W, Leonov, G, Partridge, T, Nicastri, A, Ternette, N, Borrow, B

Impact of micropolymorphism outside the 1 peptide binding groove in the clinically-relevant allele HLA-C*14 on T cell responses in HIV-1 infection Dahkki Chikata, T, Paes, W, Kuse, N, Partridge, T, Ternette, N, Borrow, P, Takiguchi, M

Identification of an unconventional sub-peptidome bound to the Behçet's disease - associated HLA-B*51:01 that is regulated by endoplasmic reticulum aminopeptidase 1 (ERAP1) Dahkki Chen, L, Shi, H, Koftori, D, Sekine, T, Nicastri, A, Ternette, N, Bowness, P

Discrimination between human leukocyte antigen class I-bound and co-purified HIV-derived peptides in immunopeptidomics workflows Dahkki Partridge, T, Nicastri, A, Kliszczak, A, Yindom, L, Kessler, B, Ternette, N, Borrow, P

Phosphorylation of PNKP by ATM prevents its proteasomal degradation and enhances resistance to oxidative stress. Dahkki Parsons, J, Khoronenkova, S, Dianova, I, Ternette, N, Kessler, B, Datta, P, Dianov, G

MS-rescue: a computational pipeline to increase the quality and yield of immunopeptidomics experiments Dahkki Andreatta, M, Nicastri, A, Peng, X, Hancock, G, Dorrell, L, Ternette, N, Nielsen, M

NNAlign_MA; MHC peptidome deconvolution for accurate MHC binding motif characterization and improved T-cell epitope predictions Dahkki Alvarez, B, Reynisson, B, Barra, C, Buus, S, Ternette, N, Connelley, T, Andreatta, M, Nielsen, M

The Succinated Proteome of FH-Mutant Tumours. Dahkki Yang, M, Ternette, N, Su, H, Dabiri, R, Kessler, B, Adam, J, Teh, B, Pollard, P

HLA variants have different preferences to present proteins with specific molecular functions which are complemented in frequent haplotypes Dahkki Karnaukhov, V, Paes, W, Woodhouse, IB, Partridge, T, Nicastri, A, Brackenridge, S, Ternette, N, Koohy, H, Borrow, P