Methods for Determining the Statistical Significance of Enrichment or Depletion of Gene Ontology Classifications under Weighted Membership by Ernesto eIacucci, Hans H. Zingg, Theodore J. Perkins, Theodore J. Perkins

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Empirical Bayes single nucleotide variant-calling for next-generation sequencing data by Ali Karimnezhad, Theodore J. Perkins

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Strategies for cellular decision‐making by Theodore J Perkins, Peter S Swain

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Implementing arithmetic and other analytic operations by transcriptional regulation. by Sean M Cory, Theodore J Perkins

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WACS: improving ChIP-seq peak calling by optimally weighting controls by Aseel Awdeh, Marcel Turcotte, Theodore J. Perkins

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Pooled screening for synergistic interactions subject to blocking and noise. by Kyle Li, Doina Precup, Theodore J Perkins

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Identifying transcription factors with cell-type specific DNA binding signatures by Aseel Awdeh, Marcel Turcotte, Theodore J. Perkins

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Uncovering robust patterns of microRNA co-expression across cancers using Bayesian Relevance Networks. by Parameswaran Ramachandran, Daniel Sánchez-Taltavull, Theodore J Perkins

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A general model of codon bias due to GC mutational bias. by Gareth A Palidwor, Theodore J Perkins, Xuhua Xia

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Reverse engineering the gap gene network of Drosophila melanogaster. by Theodore J Perkins, Johannes Jaeger, John Reinitz, Leon Glass

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Bayesian Correlation Analysis for Sequence Count Data. by Daniel Sánchez-Taltavull, Parameswaran Ramachandran, Nelson Lau, Theodore J Perkins

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Human gene expression variability and its dependence on methylation and aging by Nasser Bashkeel, Theodore J. Perkins, Mads Kærn, Jonathan M. Lee

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Induction of senescence in primary glioblastoma cells by serum and TGFβ by Ritesh Kumar, Alexander Gont, Theodore J. Perkins, Jennifer E. L. Hanson, Ian A. J. Lorimer

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Estimating the stochastic bifurcation structure of cellular networks. by Carl Song, Hilary Phenix, Vida Abedi, Matthew Scott, Brian P Ingalls, Mads Kaern, Theodore J Perkins

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Correction: Estimating the Stochastic Bifurcation Structure of Cellular Networks. by Carl Song, Hilary Phenix, Vida Abedi, Matthew Scott, Brian P. Ingalls, Mads Kærn, Theodore J. Perkins

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Absolute quantification of transcription factors in human erythropoiesis using selected reaction monitoring mass spectrometry by Mark A. Gillespie, Carmen G. Palii, Daniel Sanchez-Taltavull, Theodore J. Perkins, Marjorie Brand, Jeffrey A. Ranish

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Accuracy and reproducibility of somatic point mutation calling in clinical-type targeted sequencing data by Ali Karimnezhad, Gareth A. Palidwor, Kednapa Thavorn, David J. Stewart, Pearl A. Campbell, Bryan Lo, Theodore J. Perkins

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Quantitative epistasis analysis and pathway inference from genetic interaction data. by Hilary Phenix, Katy Morin, Cory Batenchuk, Jacob Parker, Vida Abedi, Liu Yang, Lioudmila Tepliakova, Theodore J Perkins, Mads Kærn

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Induction of Activating Transcription Factor 3 Is Associated with Cisplatin Responsiveness in Non–Small Cell Lung Carcinoma Cells by Jair Bar, Mohamed S. Hasim, Tabassom Baghai, Nima Niknejad, Theodore J. Perkins, David J. Stewart, Harmanjatinder S. Sekhon, Patrick J. Villeneuve, Jim Dimitroulakos

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Costs of Next-Generation Sequencing Assays in Non-Small Cell Lung Cancer: A Micro-Costing Study by Srishti Kumar, Alexandria Bennett, Pearl A. Campbell, Gareth Palidwor, Bryan Lo, Theodore J. Perkins, Surapon Nochaiwong, Harmanjatinder S. Sekhon, David J. Stewart, Kednapa Thavorn

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