Harmonized Genome Wide Typing of Tubercle Bacilli Using a Web-Based Gene-By-Gene Nomenclature SystemResearch in context by Thomas A. Kohl, Dag Harmsen, Jörg Rothgänger, Timothy Walker, Roland Diel, Stefan Niemann

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Delineating Mycobacterium abscessus population structure and transmission employing high-resolution core genome multilocus sequence typing by Margo Diricks, Matthias Merker, Nils Wetzstein, Thomas A. Kohl, Stefan Niemann, Florian P. Maurer

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Survival of hypoxia-induced dormancy is not a common feature of all strains of the Mycobacterium tuberculosis complex by Barbara Tizzano, Tobias K. Dallenga, Christian Utpatel, Jochen Behrends, Susanne Homolka, Thomas A. Kohl, Stefan Niemann

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Whole-Genome Sequencing for Risk Assessment of Long-term Shiga Toxin–producing Escherichia coli by Johannes K.-M. Knobloch, Stefan Niemann, Thomas A. Kohl, Ulrich Lindner, Martin Nitschke, Friedhelm Sayk, Werner Solbach

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Insertion and deletion evolution reflects antibiotics selection pressure in a Mycobacterium tuberculosis outbreak. by Maxime Godfroid, Tal Dagan, Matthias Merker, Thomas A Kohl, Roland Diel, Florian P Maurer, Stefan Niemann, Anne Kupczok

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Understanding Mycobacterium tuberculosis evolution in times of antibiotic treatment – A whole genome approach by Matthias Merker, Silke Feuerriegel, Helen Cox, Sonia Borrell, Sebastien Gagneux, Sabine Rüsch-Gerdes, Thomas A Kohl, Stefan Niemann

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Longitudinal Outbreak of Multidrug-Resistant Tuberculosis in a Hospital Setting, Serbia by Irena Arandjelović, Matthias Merker, Elvira Richter, Thomas A. Kohl, Branislava Savić, Ivan Soldatović, Thierry Wirth, Dragana Vuković, Stefan Niemann

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Transmission Dynamics of a Mycobacterium tuberculosis Complex Outbreak in an Indigenous Population in the Colombian Amazon Region by Francy J. Pérez-Llanos, Viola Dreyer, Ivan Barilar, Christian Utpatel, Thomas A. Kohl, Martha Isabel Murcia, Susanne Homolka, Matthias Merker, Stefan Niemann

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Whole genome sequencing-based classification of human-related Haemophilus species and detection of antimicrobial resistance genes by Margo Diricks, Thomas A. Kohl, Nadja Käding, Vladislav Leshchinskiy, Susanne Hauswaldt, Omar Jiménez Vázquez, Christian Utpatel, Stefan Niemann, Jan Rupp, Matthias Merker

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Transmission patterns of rifampicin resistant Mycobacterium tuberculosis complex strains in Cameroon: a genomic epidemiological study by Matthias Merker, Nkongho F. Egbe, Yannick R. Ngangue, Comfort Vuchas, Thomas A. Kohl, Viola Dreyer, Christopher Kuaban, Jürgen Noeske, Stefan Niemann, Melissa S. Sander

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Whole genome sequencing reveals complex evolution patterns of multidrug-resistant Mycobacterium tuberculosis Beijing strains in patients. by Matthias Merker, Thomas A Kohl, Andreas Roetzer, Leona Truebe, Elvira Richter, Sabine Rüsch-Gerdes, Lanfranco Fattorini, Marco R Oggioni, Helen Cox, Francis Varaine, Stefan Niemann

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The Genetic Transformation of <named-content content-type="genus-species">Chlamydia pneumoniae</named-content> by Kensuke Shima, Maximilian Wanker, Rachel J. Skilton, Lesley T. Cutcliffe, Christiane Schnee, Thomas A. Kohl, Stefan Niemann, Javier Geijo, Matthias Klinger, Peter Timms, Thomas Rattei, Konrad Sachse, Ian N. Clarke, Jan Rupp

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Phenotypic heterogeneity affects Stenotrophomonas maltophilia K279a colony morphotypes and β-lactamase expression by Ebrahim Mama Abda, Dagmar eKrysciak, Ines eKrohn-Molt, Uwe eMamat, Christel eSchmeisser, Konrad U. Förstner, Ulrich E. Schaible, Thomas A. Kohl, Stefan eNieman, Stefan eNieman, Wolfgang R. Streit

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Multidrug- and Extensively Drug-Resistant Mycobacterium tuberculosis Beijing Clades, Ukraine, 2015 by Matthias Merker, Elena Nikolaevskaya, Thomas A. Kohl, Barbara Molina-Moya, Olha Pavlovska, Patrik Brännberg, Andrii Dudnyk, Valentyna Stokich, Ivan Barilar, Iryna Marynova, Tetiana Filipova, Cristina Prat, Anders Sjöstedt, Jose Dominguez, Olena Rzhepishevska, Stefan Niemann

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The relationship between transmission time and clustering methods in Mycobacterium tuberculosis epidemiologyResearch in context by Conor J. Meehan, Pieter Moris, Thomas A. Kohl, Jūlija Pečerska, Suriya Akter, Matthias Merker, Christian Utpatel, Patrick Beckert, Florian Gehre, Pauline Lempens, Tanja Stadler, Michel K. Kaswa, Denise Kühnert, Stefan Niemann, Bouke C. de Jong

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Phylogenetically informative mutations in genes implicated in antibiotic resistance in Mycobacterium tuberculosis complex by Matthias Merker, Thomas A. Kohl, Ivan Barilar, Sönke Andres, Philip W. Fowler, Erja Chryssanthou, Kristian Ängeby, Pontus Jureen, Danesh Moradigaravand, Julian Parkhill, Sharon J. Peacock, Thomas Schön, Florian P. Maurer, Timothy Walker, Claudio Köser, Stefan Niemann

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New Mycobacterium tuberculosis Complex Sublineage, Brazzaville, Congo by Sven Malm, Laure S. Ghoma Linguissi, Emmanuel M. Tekwu, Jeannhey C. Vouvoungui, Thomas A. Kohl, Patrick Beckert, Anissa Sidibe, Sabine Rüsch-Gerdes, Igor K. Madzou-Laboum, Sylvie Kwedi, Véronique Penlap Beng, Matthias Frank, Francine Ntoumi, Stefan Niemann

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Implementation of whole genome sequencing for tuberculosis diagnostics in a low-middle income, high MDR-TB burden country by Monica Vogel, Christian Utpatel, Caroline Corbett, Thomas A. Kohl, Altyn Iskakova, Sevim Ahmedov, Uladzimir Antonenka, Viola Dreyer, Ainura Ibrahimova, Chynara Kamarli, Dilorom Kosimova, Vanessa Mohr, Evgeni Sahalchyk, Meerim Sydykova, Nagira Umetalieva, Abdylat Kadyrov, Gulmira Kalmambetova, Stefan Niemann, Harald Hoffmann

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Transcontinental spread and evolution of Mycobacterium tuberculosis W148 European/Russian clade toward extensively drug resistant tuberculosis by Matthias Merker, Jean-Philippe Rasigade, Maxime Barbier, Helen Cox, Silke Feuerriegel, Thomas A. Kohl, Egor Shitikov, Kadri Klaos, Cyril Gaudin, Rudy Antoine, Roland Diel, Sonia Borrell, Sebastien Gagneux, Vladyslav Nikolayevskyy, Sönke Andres, Valeriu Crudu, Philip Supply, Stefan Niemann, Thierry Wirth

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Molecular Epidemiology of Mycobacterium abscessus Isolates Recovered from German Cystic Fibrosis Patients by Nils Wetzstein, Margo Diricks, Thomas A. Kohl, Thomas A. Wichelhaus, Sönke Andres, Laura Paulowski, Carsten Schwarz, Astrid Lewin, Jan Kehrmann, Barbara C. Kahl, Karl Dichtl, Christian Hügel, Olaf Eickmeier, Christina Smaczny, Annika Schmidt, Stefan Zimmermann, Lutz Nährlich, Sylvia Hafkemeyer, Stefan Niemann, Florian P. Maurer, Michael Hogardt

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