Whole genome sequencing and microsatellite analysis of the Plasmodium falciparum E5 NF54 strain show that the var, rifin and stevor gene families follow Mendelian inheritance od Ellen Bruske, Thomas D. Otto, Matthias Frank

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Using topic modeling to detect cellular crosstalk in scRNA-seq. od Alexandrina Pancheva, Helen Wheadon, Simon Rogers, Thomas D Otto

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Varia: a tool for prediction, analysis and visualisation of variable genes od Gavin Mackenzie, Rasmus W. Jensen, Thomas Lavstsen, Thomas D. Otto

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Progression of the canonical reference malaria parasite genome from 2002–2019 [version 2; peer review: 3 approved] od Ulrike Böhme, Thomas D. Otto, Mandy Sanders, Chris I. Newbold, Matthew Berriman

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Progression of the canonical reference malaria parasite genome from 2002–2019 [version 1; peer review: 2 approved, 1 approved with reservations] od Ulrike Böhme, Thomas D. Otto, Mandy Sanders, Chris I. Newbold, Matthew Berriman

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Single-cell transcriptomic analysis of bloodstream Trypanosoma brucei reconstructs cell cycle progression and developmental quorum sensing od Emma M. Briggs, Federico Rojas, Richard McCulloch, Keith R. Matthews, Thomas D. Otto

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Identification of a conserved var gene in different Plasmodium falciparum strains od Sandra Dimonte, Ellen I. Bruske, Corinna Enderes, Thomas D. Otto, Louise Turner, Peter Kremsner, Matthias Frank

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Transcriptional and genomic parallels between the monoxenous parasite Herpetomonas muscarum and Leishmania. od Megan A Sloan, Karen Brooks, Thomas D Otto, Mandy J Sanders, James A Cotton, Petros Ligoxygakis

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Profiling the bloodstream form and procyclic form Trypanosoma brucei cell cycle using single-cell transcriptomics od Emma M Briggs, Catarina A Marques, Guy R Oldrieve, Jihua Hu, Thomas D Otto, Keith R Matthews

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Refining the transcriptome of the human malaria parasite Plasmodium falciparum using amplification-free RNA-seq od Lia Chappell, Philipp Ross, Lindsey Orchard, Timothy J. Russell, Thomas D. Otto, Matthew Berriman, Julian C. Rayner, Manuel Llinás

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Double-negative-2 B cells are the major synovial plasma cell precursor in rheumatoid arthritis od Elinor Wing, Catherine Sutherland, Katherine Miles, David Gray, Carl S. Goodyear, Thomas D. Otto, Stefan Breusch, Graeme Cowan, Mohini Gray

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TCRβ Sequencing Reveals Spatial and Temporal Evolution of Clonal CD4 T Cell Responses in a Breach of Tolerance Model of Inflammatory Arthritis od Shaima Al Khabouri, Robert A. Benson, Catriona T. Prendergast, Joshua I. Gray, Thomas D. Otto, James M. Brewer, Paul Garside

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Evolutionary analysis of the most polymorphic gene family in falciparum malaria [version 1; peer review: 1 approved, 2 approved with reservations] od Thomas D. Otto, Sammy A. Assefa, Ulrike Böhme, Mandy J. Sanders, Dominic Kwiatkowski, Pf3k consortium, Matt Berriman, Chris Newbold

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The Impact of Malaria Parasites on Dendritic Cell–T Cell Interaction od Rowland S. Osii, Rowland S. Osii, Thomas D. Otto, Paul Garside, Francis M. Ndungu, Francis M. Ndungu, Francis M. Ndungu, James M. Brewer

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Comprehensive evaluation of Toxoplasma gondii VEG and Neospora caninum LIV genomes with tachyzoite stage transcriptome and proteome defines novel transcript features. od Abhinay Ramaprasad, Tobias Mourier, Raeece Naeem, Tareq B Malas, Ehab Moussa, Aswini Panigrahi, Sarah J Vermont, Thomas D Otto, Jonathan Wastling, Arnab Pain

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Plasmodium knowlesi genome sequences from clinical isolates reveal extensive genomic dimorphism. od Miguel M Pinheiro, Md Atique Ahmed, Scott B Millar, Theo Sanderson, Thomas D Otto, Woon Chan Lu, Sanjeev Krishna, Julian C Rayner, Janet Cox-Singh

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Identification of novel PfEMP1 variants containing domain cassettes 11, 15 and 8 that mediate the Plasmodium falciparum virulence-associated rosetting phenotype. od Florence E McLean, Brian R Omondi, Nouhoum Diallo, Stanley Otoboh, Carolyne Kifude, Abdirahman I Abdi, Rivka Lim, Thomas D Otto, Ashfaq Ghumra, J Alexandra Rowe

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Genetic factors regulating Plasmodium falciparum gametocytogenesis identified by phenotypic screens od Camilla V. Pires, Jyotsna Chawla, Lauriane Sollelis, Jenna Oberstaller, Min Zhang, Chengqi Wang, Justin Gibbons, Julian C. Rayner, Thomas D. Otto, Matthias Marti, John H. Adams

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A novel Modulator of Ring Stage Translation (MRST) gene alters artemisinin sensitivity in Plasmodium falciparum od Caroline Simmons, Justin Gibbons, Chengqi Wang, Camilla Valente Pires, Min Zhang, Faiza Siddiqui, Jenna Oberstaller, Debora Casandra, Andreas Seyfang, Liwang Cui, Thomas D. Otto, John H. Adams

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A new Plasmodium vivax reference sequence with improved assembly of the subtelomeres reveals an abundance of pir genes [version 1; referees: 2 approved] od Sarah Auburn, Ulrike Böhme, Sascha Steinbiss, Hidayat Trimarsanto, Jessica Hostetler, Mandy Sanders, Qi Gao, Francois Nosten, Chris I. Newbold, Matthew Berriman, Ric N. Price, Thomas D. Otto

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