Whole genome sequencing and microsatellite analysis of the Plasmodium falciparum E5 NF54 strain show that the var, rifin and stevor gene families follow Mendelian inheritance -н Ellen Bruske, Thomas D. Otto, Matthias Frank

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Using topic modeling to detect cellular crosstalk in scRNA-seq. -н Alexandrina Pancheva, Helen Wheadon, Simon Rogers, Thomas D Otto

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Varia: a tool for prediction, analysis and visualisation of variable genes -н Gavin Mackenzie, Rasmus W. Jensen, Thomas Lavstsen, Thomas D. Otto

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Progression of the canonical reference malaria parasite genome from 2002–2019 [version 2; peer review: 3 approved] -н Ulrike Böhme, Thomas D. Otto, Mandy Sanders, Chris I. Newbold, Matthew Berriman

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Progression of the canonical reference malaria parasite genome from 2002–2019 [version 1; peer review: 2 approved, 1 approved with reservations] -н Ulrike Böhme, Thomas D. Otto, Mandy Sanders, Chris I. Newbold, Matthew Berriman

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Single-cell transcriptomic analysis of bloodstream Trypanosoma brucei reconstructs cell cycle progression and developmental quorum sensing -н Emma M. Briggs, Federico Rojas, Richard McCulloch, Keith R. Matthews, Thomas D. Otto

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Identification of a conserved var gene in different Plasmodium falciparum strains -н Sandra Dimonte, Ellen I. Bruske, Corinna Enderes, Thomas D. Otto, Louise Turner, Peter Kremsner, Matthias Frank

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Transcriptional and genomic parallels between the monoxenous parasite Herpetomonas muscarum and Leishmania. -н Megan A Sloan, Karen Brooks, Thomas D Otto, Mandy J Sanders, James A Cotton, Petros Ligoxygakis

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Profiling the bloodstream form and procyclic form Trypanosoma brucei cell cycle using single-cell transcriptomics -н Emma M Briggs, Catarina A Marques, Guy R Oldrieve, Jihua Hu, Thomas D Otto, Keith R Matthews

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Refining the transcriptome of the human malaria parasite Plasmodium falciparum using amplification-free RNA-seq -н Lia Chappell, Philipp Ross, Lindsey Orchard, Timothy J. Russell, Thomas D. Otto, Matthew Berriman, Julian C. Rayner, Manuel Llinás

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Double-negative-2 B cells are the major synovial plasma cell precursor in rheumatoid arthritis -н Elinor Wing, Catherine Sutherland, Katherine Miles, David Gray, Carl S. Goodyear, Thomas D. Otto, Stefan Breusch, Graeme Cowan, Mohini Gray

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TCRβ Sequencing Reveals Spatial and Temporal Evolution of Clonal CD4 T Cell Responses in a Breach of Tolerance Model of Inflammatory Arthritis -н Shaima Al Khabouri, Robert A. Benson, Catriona T. Prendergast, Joshua I. Gray, Thomas D. Otto, James M. Brewer, Paul Garside

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Evolutionary analysis of the most polymorphic gene family in falciparum malaria [version 1; peer review: 1 approved, 2 approved with reservations] -н Thomas D. Otto, Sammy A. Assefa, Ulrike Böhme, Mandy J. Sanders, Dominic Kwiatkowski, Pf3k consortium, Matt Berriman, Chris Newbold

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The Impact of Malaria Parasites on Dendritic Cell–T Cell Interaction -н Rowland S. Osii, Rowland S. Osii, Thomas D. Otto, Paul Garside, Francis M. Ndungu, Francis M. Ndungu, Francis M. Ndungu, James M. Brewer

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Comprehensive evaluation of Toxoplasma gondii VEG and Neospora caninum LIV genomes with tachyzoite stage transcriptome and proteome defines novel transcript features. -н Abhinay Ramaprasad, Tobias Mourier, Raeece Naeem, Tareq B Malas, Ehab Moussa, Aswini Panigrahi, Sarah J Vermont, Thomas D Otto, Jonathan Wastling, Arnab Pain

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Plasmodium knowlesi genome sequences from clinical isolates reveal extensive genomic dimorphism. -н Miguel M Pinheiro, Md Atique Ahmed, Scott B Millar, Theo Sanderson, Thomas D Otto, Woon Chan Lu, Sanjeev Krishna, Julian C Rayner, Janet Cox-Singh

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Identification of novel PfEMP1 variants containing domain cassettes 11, 15 and 8 that mediate the Plasmodium falciparum virulence-associated rosetting phenotype. -н Florence E McLean, Brian R Omondi, Nouhoum Diallo, Stanley Otoboh, Carolyne Kifude, Abdirahman I Abdi, Rivka Lim, Thomas D Otto, Ashfaq Ghumra, J Alexandra Rowe

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Genetic factors regulating Plasmodium falciparum gametocytogenesis identified by phenotypic screens -н Camilla V. Pires, Jyotsna Chawla, Lauriane Sollelis, Jenna Oberstaller, Min Zhang, Chengqi Wang, Justin Gibbons, Julian C. Rayner, Thomas D. Otto, Matthias Marti, John H. Adams

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A novel Modulator of Ring Stage Translation (MRST) gene alters artemisinin sensitivity in Plasmodium falciparum -н Caroline Simmons, Justin Gibbons, Chengqi Wang, Camilla Valente Pires, Min Zhang, Faiza Siddiqui, Jenna Oberstaller, Debora Casandra, Andreas Seyfang, Liwang Cui, Thomas D. Otto, John H. Adams

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A new Plasmodium vivax reference sequence with improved assembly of the subtelomeres reveals an abundance of pir genes [version 1; referees: 2 approved] -н Sarah Auburn, Ulrike Böhme, Sascha Steinbiss, Hidayat Trimarsanto, Jessica Hostetler, Mandy Sanders, Qi Gao, Francois Nosten, Chris I. Newbold, Matthew Berriman, Ric N. Price, Thomas D. Otto

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