Whole genome sequencing and microsatellite analysis of the Plasmodium falciparum E5 NF54 strain show that the var, rifin and stevor gene families follow Mendelian inheritance by Ellen Bruske, Thomas D. Otto, Matthias Frank

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Using topic modeling to detect cellular crosstalk in scRNA-seq. by Alexandrina Pancheva, Helen Wheadon, Simon Rogers, Thomas D Otto

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Varia: a tool for prediction, analysis and visualisation of variable genes by Gavin Mackenzie, Rasmus W. Jensen, Thomas Lavstsen, Thomas D. Otto

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Progression of the canonical reference malaria parasite genome from 2002–2019 [version 2; peer review: 3 approved] by Ulrike Böhme, Thomas D. Otto, Mandy Sanders, Chris I. Newbold, Matthew Berriman

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Progression of the canonical reference malaria parasite genome from 2002–2019 [version 1; peer review: 2 approved, 1 approved with reservations] by Ulrike Böhme, Thomas D. Otto, Mandy Sanders, Chris I. Newbold, Matthew Berriman

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Identification of a conserved var gene in different Plasmodium falciparum strains by Sandra Dimonte, Ellen I. Bruske, Corinna Enderes, Thomas D. Otto, Louise Turner, Peter Kremsner, Matthias Frank

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Transcriptional and genomic parallels between the monoxenous parasite Herpetomonas muscarum and Leishmania. by Megan A Sloan, Karen Brooks, Thomas D Otto, Mandy J Sanders, James A Cotton, Petros Ligoxygakis

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Profiling the bloodstream form and procyclic form Trypanosoma brucei cell cycle using single-cell transcriptomics by Emma M Briggs, Catarina A Marques, Guy R Oldrieve, Jihua Hu, Thomas D Otto, Keith R Matthews

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Refining the transcriptome of the human malaria parasite Plasmodium falciparum using amplification-free RNA-seq by Lia Chappell, Philipp Ross, Lindsey Orchard, Timothy J. Russell, Thomas D. Otto, Matthew Berriman, Julian C. Rayner, Manuel Llinás

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Double-negative-2 B cells are the major synovial plasma cell precursor in rheumatoid arthritis by Elinor Wing, Catherine Sutherland, Katherine Miles, David Gray, Carl S. Goodyear, Thomas D. Otto, Stefan Breusch, Graeme Cowan, Mohini Gray

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The Impact of Malaria Parasites on Dendritic Cell–T Cell Interaction by Rowland S. Osii, Rowland S. Osii, Thomas D. Otto, Paul Garside, Francis M. Ndungu, Francis M. Ndungu, Francis M. Ndungu, James M. Brewer

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Comprehensive evaluation of Toxoplasma gondii VEG and Neospora caninum LIV genomes with tachyzoite stage transcriptome and proteome defines novel transcript features. by Abhinay Ramaprasad, Tobias Mourier, Raeece Naeem, Tareq B Malas, Ehab Moussa, Aswini Panigrahi, Sarah J Vermont, Thomas D Otto, Jonathan Wastling, Arnab Pain

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Identification of novel PfEMP1 variants containing domain cassettes 11, 15 and 8 that mediate the Plasmodium falciparum virulence-associated rosetting phenotype. by Florence E McLean, Brian R Omondi, Nouhoum Diallo, Stanley Otoboh, Carolyne Kifude, Abdirahman I Abdi, Rivka Lim, Thomas D Otto, Ashfaq Ghumra, J Alexandra Rowe

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Genetic factors regulating Plasmodium falciparum gametocytogenesis identified by phenotypic screens by Camilla V. Pires, Jyotsna Chawla, Lauriane Sollelis, Jenna Oberstaller, Min Zhang, Chengqi Wang, Justin Gibbons, Julian C. Rayner, Thomas D. Otto, Matthias Marti, John H. Adams

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A novel Modulator of Ring Stage Translation (MRST) gene alters artemisinin sensitivity in Plasmodium falciparum by Caroline Simmons, Justin Gibbons, Chengqi Wang, Camilla Valente Pires, Min Zhang, Faiza Siddiqui, Jenna Oberstaller, Debora Casandra, Andreas Seyfang, Liwang Cui, Thomas D. Otto, John H. Adams

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A new Plasmodium vivax reference sequence with improved assembly of the subtelomeres reveals an abundance of pir genes [version 1; referees: 2 approved] by Sarah Auburn, Ulrike Böhme, Sascha Steinbiss, Hidayat Trimarsanto, Jessica Hostetler, Mandy Sanders, Qi Gao, Francois Nosten, Chris I. Newbold, Matthew Berriman, Ric N. Price, Thomas D. Otto

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Protein KIC5 is a novel regulator of artemisinin stress response in the malaria parasite Plasmodium falciparum by Caroline F. Simmons, Justin Gibbons, Min Zhang, Jenna Oberstaller, Camilla Valente Pires, Debora Casandra, Chengqi Wang, Andreas Seyfang, Thomas D. Otto, Julian C. Rayner, John H. Adams

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Tuft Cells Increase Following Ovine Intestinal Parasite Infections and Define Evolutionarily Conserved and Divergent Responses by Katie A. Hildersley, Katie A. Hildersley, Tom N. McNeilly, Victoria Gillan, Thomas D. Otto, Stephan Löser, François Gerbe, Philippe Jay, Rick M. Maizels, Eileen Devaney, Collette Britton

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Single cell and spatial transcriptomic analyses reveal microglia-plasma cell crosstalk in the brain during Trypanosoma brucei infection by Juan F. Quintana, Praveena Chandrasegaran, Matthew C. Sinton, Emma M. Briggs, Thomas D. Otto, Rhiannon Heslop, Calum Bentley-Abbot, Colin Loney, Luis de Lecea, Neil A. Mabbott, Annette MacLeod

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Chemogenomic Profiling of a Plasmodium falciparum Transposon Mutant Library Reveals Shared Effects of Dihydroartemisinin and Bortezomib on Lipid Metabolism and Exported Proteins by Camilla Valente Pires, Jenna Oberstaller, Chengqi Wang, Debora Casandra, Min Zhang, Jyotsna Chawla, Swamy Rakesh Adapa, Thomas D. Otto, Michael T. Ferdig, Julian C. Rayner, Rays H. Y. Jiang, John H. Adams

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