Characterization of DNA G-Quadruplex Structures in Human Immunoglobulin Heavy Variable (IGHV) Genes Por Catherine Tang, Thomas MacCarthy, Thomas MacCarthy

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Correlations in Somatic Hypermutation Between Sites in IGHV Genes Can Be Explained by Interactions Between AID and/or Polη Hotspots Por Artem Krantsevich, Catherine Tang, Thomas MacCarthy, Thomas MacCarthy

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Antagonistic Coevolution Drives Whack-a-Mole Sensitivity in Gene Regulatory Networks. Por Jeewoen Shin, Thomas MacCarthy

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The preferred nucleotide contexts of the AID/APOBEC cytidine deaminases have differential effects when mutating retrotransposon and virus sequences compared to host genes. Por Jeffrey Chen, Thomas MacCarthy

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Epigenetics decouples mutational from environmental robustness. Did it also facilitate multicellularity? Por Saurabh Gombar, Thomas MacCarthy, Aviv Bergman

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Deep learning model of somatic hypermutation reveals importance of sequence context beyond hotspot targeting Por Catherine Tang, Artem Krantsevich, Thomas MacCarthy

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The cytidine deaminase under-representation reporter (CDUR) as a tool to study evolution of sequences under deaminase mutational pressure Por Maxwell Shapiro, Stephen Meier, Thomas MacCarthy

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Correction to: The cytidine deaminase under-representation reporter (CDUR) as a tool to study evolution of sequences under deaminase mutational pressure Por Maxwell Shapiro, Stephen Meier, Thomas MacCarthy

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Mutational pressure by host APOBEC3s more strongly affects genes expressed early in the lytic phase of herpes simplex virus-1 (HSV-1) and human polyomavirus (HPyV) infection. Por Maxwell Shapiro, Laurie T Krug, Thomas MacCarthy

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The underlying molecular and network level mechanisms in the evolution of robustness in gene regulatory networks. Por Mario Pujato, Thomas MacCarthy, Andras Fiser, Aviv Bergman

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Interpretable deep learning reveals the role of an E-box motif in suppressing somatic hypermutation of AGCT motifs within human immunoglobulin variable regions Por Abhik Tambe, Thomas MacCarthy, Rushad Pavri, Rushad Pavri

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Evolvability of cancer-associated genes under APOBEC3A/B selection Por Joon-Hyun Song, Liliana M. Dávalos, Thomas MacCarthy, Mehdi Damaghi

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Buffering mechanisms in aging: a systems approach toward uncovering the genetic component of aging. Por Aviv Bergman, Gil Atzmon, Kenny Ye, Thomas MacCarthy, Nir Barzilai

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Regulatory evolution and voltage-gated ion channel expression in squid axon: selection-mutation balance and fitness cliffs. Por Min Kim, Don McKinnon, Thomas MacCarthy, Barbara Rosati, David McKinnon

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The Number of Overlapping AID Hotspots in Germline IGHV Genes Is Inversely Correlated with Mutation Frequency in Chronic Lymphocytic Leukemia. Por Chaohui Yuan, Charles C Chu, Xiao-Jie Yan, Davide Bagnara, Nicholas Chiorazzi, Thomas MacCarthy

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A Bayesian model based computational analysis of the relationship between bisulfite accessible single-stranded DNA in chromatin and somatic hypermutation of immunoglobulin genes. Por Guojun Yu, Yingru Wu, Zhi Duan, Catherine Tang, Haipeng Xing, Matthew D Scharff, Thomas MacCarthy

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Recombinase-Mediated Cassette Exchange as a Novel Method To Study Somatic Hypermutation in Ramos Cells Por Linda B. Baughn, Susan L. Kalis, Thomas MacCarthy, Lirong Wei, Manxia Fan, Aviv Bergman, Matthew D. Scharff

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Beta human papillomavirus 8E6 promotes alternative end joining Por Changkun Hu, Taylor Bugbee, Rachel Palinski, Ibukun A Akinyemi, Michael T McIntosh, Thomas MacCarthy, Sumita Bhaduri-McIntosh, Nicholas Wallace

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Fine-tuning spatial-temporal dynamics and surface receptor expression support plasma cell-intrinsic longevity Por Zhixin Jing, Phillip Galbo, Luis Ovando, Megan Demouth, Skylar Welte, Rosa Park, Kartik Chandran, Yinghao Wu, Thomas MacCarthy, Deyou Zheng, David Fooksman

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A-to-I editing of Malacoherpesviridae RNAs supports the antiviral role of ADAR1 in mollusks Por Umberto Rosani, Chang-Ming Bai, Lorenzo Maso, Maxwell Shapiro, Miriam Abbadi, Stefania Domeneghetti, Chong-Ming Wang, Laura Cendron, Thomas MacCarthy, Paola Venier

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