Antagonistic Coevolution Drives Whack-a-Mole Sensitivity in Gene Regulatory Networks. 由 Jeewoen Shin, Thomas MacCarthy

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Deep learning model of somatic hypermutation reveals importance of sequence context beyond hotspot targeting 由 Catherine Tang, Artem Krantsevich, Thomas MacCarthy

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The cytidine deaminase under-representation reporter (CDUR) as a tool to study evolution of sequences under deaminase mutational pressure 由 Maxwell Shapiro, Stephen Meier, Thomas MacCarthy

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Correction to: The cytidine deaminase under-representation reporter (CDUR) as a tool to study evolution of sequences under deaminase mutational pressure 由 Maxwell Shapiro, Stephen Meier, Thomas MacCarthy

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Mutational pressure by host APOBEC3s more strongly affects genes expressed early in the lytic phase of herpes simplex virus-1 (HSV-1) and human polyomavirus (HPyV) infection. 由 Maxwell Shapiro, Laurie T Krug, Thomas MacCarthy

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Interpretable deep learning reveals the role of an E-box motif in suppressing somatic hypermutation of AGCT motifs within human immunoglobulin variable regions 由 Abhik Tambe, Thomas MacCarthy, Rushad Pavri, Rushad Pavri

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Evolvability of cancer-associated genes under APOBEC3A/B selection 由 Joon-Hyun Song, Liliana M. Dávalos, Thomas MacCarthy, Mehdi Damaghi

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Regulatory evolution and voltage-gated ion channel expression in squid axon: selection-mutation balance and fitness cliffs. 由 Min Kim, Don McKinnon, Thomas MacCarthy, Barbara Rosati, David McKinnon

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The Number of Overlapping AID Hotspots in Germline IGHV Genes Is Inversely Correlated with Mutation Frequency in Chronic Lymphocytic Leukemia. 由 Chaohui Yuan, Charles C Chu, Xiao-Jie Yan, Davide Bagnara, Nicholas Chiorazzi, Thomas MacCarthy

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Beta human papillomavirus 8E6 promotes alternative end joining 由 Changkun Hu, Taylor Bugbee, Rachel Palinski, Ibukun A Akinyemi, Michael T McIntosh, Thomas MacCarthy, Sumita Bhaduri-McIntosh, Nicholas Wallace

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Fine-tuning spatial-temporal dynamics and surface receptor expression support plasma cell-intrinsic longevity 由 Zhixin Jing, Phillip Galbo, Luis Ovando, Megan Demouth, Skylar Welte, Rosa Park, Kartik Chandran, Yinghao Wu, Thomas MacCarthy, Deyou Zheng, David Fooksman

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Post-Transformation IGHV-IGHD-IGHJ Mutations in Chronic Lymphocytic Leukemia B Cells: Implications for Mutational Mechanisms and Impact on Clinical Course 由 Davide Bagnara, Davide Bagnara, Catherine Tang, Jennifer R. Brown, Siddha Kasar, Stacey Fernandes, Monica Colombo, Stefano Vergani, Andrea N. Mazzarello, Fabio Ghiotto, Fabio Ghiotto, Silvia Bruno, Fortunato Morabito, Fortunato Morabito, Kanti R. Rai, Kanti R. Rai, Jonathan E. Kolitz, Jonathan E. Kolitz, Jacqueline C. Barrientos, Jacqueline C. Barrientos, Steven L. Allen, Steven L. Allen, Franco Fais, Franco Fais, Matthew D. Scharff, Thomas MacCarthy, Nicholas Chiorazzi, Nicholas Chiorazzi

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