Distinctive variation in the U3R region of the 5' Long Terminal Repeat from diverse HIV-1 strains. by Christelle Mbondji-Wonje, Ming Dong, Xue Wang, Jiangqin Zhao, Viswanath Ragupathy, Ana M Sanchez, Thomas N Denny, Indira Hewlett

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SARS-CoV-2 viremia but not respiratory viral load is associated with respiratory complications in patients with severe COVID-19 by Lingye Chen, Lyra B. Olson, Ibtehaj A. Naqvi, Bruce A. Sullenger, Loretta G. Que, Thomas N. Denny, Bryan D. Kraft

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Quality assurance for HIV point-of-care testing and treatment monitoring assays by Adrienne F.A. Meyers, Paul Sandstrom, Thomas N. Denny, Mackenzie Hurlston, Terry B. Ball, Rosanna W. Peeling, Debrah I. Boeras

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FlowKit: A Python Toolkit for Integrated Manual and Automated Cytometry Analysis Workflows by Scott White, Scott White, Scott White, John Quinn, Jennifer Enzor, Jennifer Enzor, Janet Staats, Janet Staats, Sarah M. Mosier, Sarah M. Mosier, James Almarode, Thomas N. Denny, Thomas N. Denny, Kent J. Weinhold, Kent J. Weinhold, Kent J. Weinhold, Guido Ferrari, Guido Ferrari, Guido Ferrari, Cliburn Chan, Cliburn Chan, Cliburn Chan

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SARS‐CoV‐2 reinfection across a spectrum of immunological states by Justine M. McKittrick, Thomas W. Burke, Elizabeth Petzold, Gregory D. Sempowski, Thomas N. Denny, Christopher R. Polage, Ephraim L. Tsalik, Micah T. McClain

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Tissue-specific genetic control of splicing: implications for the study of complex traits. by Erin L Heinzen, Dongliang Ge, Kenneth D Cronin, Jessica M Maia, Kevin V Shianna, Willow N Gabriel, Kathleen A Welsh-Bohmer, Christine M Hulette, Thomas N Denny, David B Goldstein

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T-cell count and T-cell telomere length in patients with severe COVID-19 by Bryan D. Kraft, Simon Verhulst, Tsung-Po Lai, Bruce A. Sullenger, Yunfei Wang, Wes Rountree, Lingye Chen, Christopher W. Woods, Christopher W. Woods, Thomas N. Denny, Abraham Aviv, Abraham Aviv

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Fast Dissemination of New HIV-1 CRF02/A1 Recombinants in Pakistan. by Yue Chen, Bhavna Hora, Todd DeMarco, Sharaf Ali Shah, Manzoor Ahmed, Ana M Sanchez, Chang Su, Meredith Carter, Mars Stone, Rumina Hasan, Zahra Hasan, Michael P Busch, Thomas N Denny, Feng Gao

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CD4 enumeration technologies: a systematic review of test performance for determining eligibility for antiretroviral therapy. by Rosanna W Peeling, Kimberly A Sollis, Sarah Glover, Suzanne M Crowe, Alan L Landay, Ben Cheng, David Barnett, Thomas N Denny, Thomas J Spira, Wendy S Stevens, Siobhan Crowley, Shaffiq Essajee, Marco Vitoria, Nathan Ford

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Streamlined Subpopulation, Subtype, and Recombination Analysis of HIV-1 Half-Genome Sequences Generated by High-Throughput Sequencing by Bhavna Hora, Naila Gulzar, Yue Chen, Konstantinos Karagiannis, Fangping Cai, Chang Su, Krista Smith, Vahan Simonyan, Sharaf Ali Shah, Manzoor Ahmed, Ana M. Sanchez, Mars Stone, Myron S. Cohen, Thomas N. Denny, Raja Mazumder, Feng Gao

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The magnitude and kinetics of the mucosal HIV-specific CD8+ T lymphocyte response and virus RNA load in breast milk. by Tatenda Mahlokozera, Helen H Kang, Nilu Goonetilleke, Andrea R Stacey, Rachel V Lovingood, Thomas N Denny, Linda Kalilani, James E G Bunn, Steve R Meshnick, Persephone Borrow, Norman L Letvin, Sallie R Permar, Center for HIV/AIDS Vaccine Immunology

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Reconstructing a B-cell Clonal Lineage. II. Mutation, Selection, and Affinity Maturation by Thomas B. Kepler, Supriya eMunshaw, Ruijun eZhang, Ruijun eZhang, Jae-Sung eYu, Christopher W. Woods, Thomas N. Denny, Georgia D. Tomaras, S. Munir Alam, M. Anthony Moody, Garnett eKelsoe, Hua-Xin eLiao, Barton F. Haynes

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Redirection of Cord Blood T Cells and Natural Killer Cells for Elimination of Autologous HIV-1-Infected Target Cells Using Bispecific DART® Molecules by Justin Pollara, Justin Pollara, R. Whitney Edwards, Shalini Jha, Shalini Jha, Chia-Ying Kao Lam, Liqin Liu, Gundo Diedrich, Jeffrey L. Nordstrom, Tori Huffman, Joy A. Pickeral, Thomas N. Denny, Sallie R. Permar, Sallie R. Permar, Guido Ferrari, Guido Ferrari

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Development of an international external quality assurance program for HIV-1 incidence using the Limiting Antigen Avidity assay. by Sheila M Keating, Wes Rountree, Eduard Grebe, Andrea L Pappas, Mars Stone, Dylan Hampton, Christopher A Todd, Marek S Poniewierski, Ana Sanchez, Cassandra G Porth, Thomas N Denny, Michael P Busch, EQAPOL Limiting Antigen (LAg) Incidence Assay External Quality Assurance (EQA) Program

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Effective treatment of SIVcpz-induced immunodeficiency in a captive western chimpanzee by Hannah J. Barbian, Raven Jackson-Jewett, Corrine S. Brown, Frederic Bibollet-Ruche, Gerald H. Learn, Timothy Decker, Edward F. Kreider, Yingying Li, Thomas N. Denny, Paul M. Sharp, George M. Shaw, Jeffrey Lifson, Edward P. Acosta, Michael S. Saag, Katharine J. Bar, Beatrice H. Hahn

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Elucidation of hepatitis C virus transmission and early diversification by single genome sequencing. by Hui Li, Mark B Stoddard, Shuyi Wang, Lily M Blair, Elena E Giorgi, Erica H Parrish, Gerald H Learn, Peter Hraber, Paul A Goepfert, Michael S Saag, Thomas N Denny, Barton F Haynes, Beatrice H Hahn, Ruy M Ribeiro, Alan S Perelson, Bette T Korber, Tanmoy Bhattacharya, George M Shaw

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Genetic Characterization of a Panel of Diverse HIV-1 Isolates at Seven International Sites. by Bhavna Hora, Sheila M Keating, Yue Chen, Ana M Sanchez, Ester Sabino, Gillian Hunt, Johanna Ledwaba, John Hackett, Priscilla Swanson, Indira Hewlett, Viswanath Ragupathy, Sai Vikram Vemula, Peibin Zeng, Kok-Keng Tee, Wei Zhen Chow, Hezhao Ji, Paul Sandstrom, Thomas N Denny, Michael P Busch, Feng Gao, REDS-III and EQAPOL programs

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Multivariate analysis of FcR-mediated NK cell functions identifies unique clustering among humans and rhesus macaques by Marina Tuyishime, Rachel L. Spreng, Rachel L. Spreng, Brady Hueber, Junsuke Nohara, Derrick Goodman, Derrick Goodman, Cliburn Chan, Cliburn Chan, Richard Barfield, Richard Barfield, Whitney E. Beck, Shalini Jha, Stephanie Asdell, Kevin Wiehe, Kevin Wiehe, Max M. He, David Easterhoff, Haleigh E. Conley, Taylor Hoxie, Thaddeus Gurley, Caroline Jones, Nihar Deb Adhikary, Francois Villinger, Rasmi Thomas, Thomas N. Denny, Thomas N. Denny, Michael Anthony Moody, Michael Anthony Moody, Michael Anthony Moody, Georgia D. Tomaras, Georgia D. Tomaras, Georgia D. Tomaras, Georgia D. Tomaras, Georgia D. Tomaras, Justin Pollara, Justin Pollara, Justin Pollara, R. Keith Reeves, R. Keith Reeves, R. Keith Reeves, Guido Ferrari, Guido Ferrari, Guido Ferrari

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Dysregulated transcriptional responses to SARS-CoV-2 in the periphery by Micah T. McClain, Florica J. Constantine, Ricardo Henao, Yiling Liu, Ephraim L. Tsalik, Thomas W. Burke, Julie M. Steinbrink, Elizabeth Petzold, Bradly P. Nicholson, Robert Rolfe, Bryan D. Kraft, Matthew S. Kelly, Daniel R. Saban, Chen Yu, Xiling Shen, Emily M. Ko, Gregory D. Sempowski, Thomas N. Denny, Geoffrey S. Ginsburg, Christopher W. Woods

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Differential chromatin accessibility in peripheral blood mononuclear cells underlies COVID-19 disease severity prior to seroconversion by Nicholas S. Giroux, Shengli Ding, Micah T. McClain, Thomas W. Burke, Elizabeth Petzold, Hong A. Chung, Grecia O. Rivera, Ergang Wang, Rui Xi, Shree Bose, Tomer Rotstein, Bradly P. Nicholson, Tianyi Chen, Ricardo Henao, Gregory D. Sempowski, Thomas N. Denny, Maria Iglesias De Ussel, Lisa L. Satterwhite, Emily R. Ko, Geoffrey S. Ginsburg, Bryan D. Kraft, Ephraim L. Tsalik, Xiling Shen, Christopher W. Woods

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