Showing 1 - 20 results of 52 for search 'Timothy D. Read', query time: 0.06s Refine Results
  1. 1
    'SEEDY' (Simulation of Evolutionary and Epidemiological Dynamics): An R Package to Follow Accumulation of Within-Host Mutation in Pathogens.

    'SEEDY' (Simulation of Evolutionary and Epidemiological Dynamics): An R Package to Follow Accumulation of Within-Host Mutation in Pathogens. by Colin J Worby, Timothy D Read

    Published 2015-01-01
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  2. 2
    Bactopia: a Flexible Pipeline for Complete Analysis of Bacterial Genomes

    Bactopia: a Flexible Pipeline for Complete Analysis of Bacterial Genomes by Robert A. Petit, Timothy D. Read

    Published 2020-08-01
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  3. 3
    Staphylococcus aureus viewed from the perspective of 40,000+ genomes

    Staphylococcus aureus viewed from the perspective of 40,000+ genomes by Robert A. Petit III, Timothy D. Read

    Published 2018-07-01
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  4. 4
    The role of hypermutation and collateral sensitivity in antimicrobial resistance diversity of Pseudomonas aeruginosa populations in cystic fibrosis lung infection

    The role of hypermutation and collateral sensitivity in antimicrobial resistance diversity of Pseudomonas aeruginosa populations in cystic fibrosis lung infection by Jelly Vanderwoude, Sheyda Azimi, Timothy D. Read, Stephen P. Diggle

    Published 2024-02-01
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  5. 5
    Detecting patterns of accessory genome coevolution in Staphylococcus aureus using data from thousands of genomes

    Detecting patterns of accessory genome coevolution in Staphylococcus aureus using data from thousands of genomes by Rohan S Mehta, Robert A Petit, Timothy D Read, Daniel B Weissman

    Published 2023-06-01
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  6. 6
    Development of an Amplicon Nanopore Sequencing Strategy for Detection of Mutations Conferring Intermediate Resistance to Vancomycin in Staphylococcus aureus Strains

    Development of an Amplicon Nanopore Sequencing Strategy for Detection of Mutations Conferring Intermediate Resistance to Vancomycin in Staphylococcus aureus Strains by Abraham G. Moller, Robert A. Petit, Michelle H. Davis, Timothy D. Read

    Published 2023-02-01
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  7. 7
    Chlamydia suis undergoes interclade recombination promoting Tet-island exchange

    Chlamydia suis undergoes interclade recombination promoting Tet-island exchange by Helena Seth-Smith, Sankhya Bommana, Deborah Dean, Timothy D. Read, Hanna Marti

    Published 2024-07-01
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  8. 8
    Genotyping of Bacillus cereus strains by microarray-based resequencing.

    Genotyping of Bacillus cereus strains by microarray-based resequencing. by Michael E Zwick, Maureen P Kiley, Andrew C Stewart, Alfred Mateczun, Timothy D Read

    Published 2008-01-01
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  9. 9
    Comparative Analysis of <named-content content-type="genus-species">Chlamydia psittaci</named-content> Genomes Reveals the Recent Emergence of a Pathogenic Lineage with a Broad Host Range

    Comparative Analysis of <named-content content-type="genus-species">Chlamydia psittaci</named-content> Genomes Reveals the Recent Emergence of a Pathogenic Lineage with a Broad Hos... by Timothy D. Read, Sandeep J. Joseph, Xavier Didelot, Brooke Liang, Lisa Patel, Deborah Dean

    Published 2013-05-01
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  10. 10
    Average nucleotide identity-based Staphylococcus aureus strain grouping allows identification of strain-specific genes in the pangenome

    Average nucleotide identity-based Staphylococcus aureus strain grouping allows identification of strain-specific genes in the pangenome by Vishnu Raghuram, Robert A. Petit, Zach Karol, Rohan Mehta, Daniel B. Weissman, Timothy D. Read

    Published 2024-07-01
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  11. 11
    Metagenomic Shotgun Sequencing of Endocervical, Vaginal, and Rectal Samples among Fijian Women with and without Chlamydia trachomatis Reveals Disparate Microbial Populations and Function across Anatomic Sites: a Pilot Study

    Metagenomic Shotgun Sequencing of Endocervical, Vaginal, and Rectal Samples among Fijian Women with and without Chlamydia trachomatis Reveals Disparate Microbial Populations and Fu... by Sankhya Bommana, Gracie Richards, Mike Kama, Reshma Kodimerla, Kenan Jijakli, Timothy D. Read, Deborah Dean

    Published 2022-06-01
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  12. 12
    Effect of genetic background on the evolution of Vancomycin-Intermediate Staphylococcus aureus (VISA)

    Effect of genetic background on the evolution of Vancomycin-Intermediate Staphylococcus aureus (VISA) by Michelle Su, Michelle H. Davis, Jessica Peterson, Claudia Solis-Lemus, Sarah W. Satola, Timothy D. Read

    Published 2021-07-01
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  13. 13
    Fine-scale differentiation between Bacillus anthracis and Bacillus cereus group signatures in metagenome shotgun data

    Fine-scale differentiation between Bacillus anthracis and Bacillus cereus group signatures in metagenome shotgun data by Robert A. Petit III, James M. Hogan, Matthew N. Ezewudo, Sandeep J. Joseph, Timothy D. Read

    Published 2018-08-01
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  14. 14
    The single-species metagenome: subtyping Staphylococcus aureus core genome sequences from shotgun metagenomic data

    The single-species metagenome: subtyping Staphylococcus aureus core genome sequences from shotgun metagenomic data by Sandeep J. Joseph, Ben Li, Robert A. Petit III, Zhaohui S. Qin, Lyndsey Darrow, Timothy D. Read

    Published 2016-10-01
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  15. 15
    USA300 Staphylococcus aureus persists on multiple body sites following an infection

    USA300 Staphylococcus aureus persists on multiple body sites following an infection by Timothy D. Read, Robert A. Petit, Zachary Yin, Tuyaa Montgomery, Moira C. McNulty, Michael Z. David

    Published 2018-12-01
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  16. 16
    Direct amplification, sequencing and profiling of Chlamydia trachomatis strains in single and mixed infection clinical samples.

    Direct amplification, sequencing and profiling of Chlamydia trachomatis strains in single and mixed infection clinical samples. by Sandeep J Joseph, Ben Li, Tanvi Ghonasgi, Chad P Haase, Zhaohui S Qin, Deborah Dean, Timothy D Read

    Published 2014-01-01
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  17. 17
    Genotypic and Phenotypic Diversity of <named-content content-type="genus-species">Staphylococcus aureus</named-content> Isolates from Cystic Fibrosis Patient Lung Infections and Their Interactions with <named-content content-type="genus-species">Pseudomonas aeruginosa</named-content>

    Genotypic and Phenotypic Diversity of <named-content content-type="genus-species">Staphylococcus aureus</named-content> Isolates from Cystic Fibrosis Patient Lung Infections and Th... by Eryn E. Bernardy, Robert A. Petit, Vishnu Raghuram, Ashley M. Alexander, Timothy D. Read, Joanna B. Goldberg

    Published 2020-06-01
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  18. 18
    Unique microbial diversity, community composition, and networks among Pacific Islander endocervical and vaginal microbiomes with and without Chlamydia trachomatis infection in Fiji

    Unique microbial diversity, community composition, and networks among Pacific Islander endocervical and vaginal microbiomes with and without Chlamydia trachomatis infection in Fiji by Sankhya Bommana, Yi-Juan Hu, Mike Kama, Ruohong Wang, Reshma Kodimerla, Kenan Jijakli, Timothy D. Read, Deborah Dean

    Published 2024-01-01
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  19. 19
    Strand-specific RNA-seq reveals ordered patterns of sense and antisense transcription in Bacillus anthracis.

    Strand-specific RNA-seq reveals ordered patterns of sense and antisense transcription in Bacillus anthracis. by Karla D Passalacqua, Anjana Varadarajan, Charlotte Weist, Brian D Ondov, Benjamin Byrd, Timothy D Read, Nicholas H Bergman

    Published 2012-01-01
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  20. 20
    Correction to: Protocol for the Emory University African American Vaginal, oral, and gut microbiome in pregnancy cohort study

    Correction to: Protocol for the Emory University African American Vaginal, oral, and gut microbiome in pregnancy cohort study by Elizabeth J. Corwin, Carol J. Hogue, Bradley Pearce, Cherie C. Hill, Timothy D. Read, Jennifer Mulle, Anne L. Dunlop

    Published 2017-11-01
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