Binding site graphs: a new graph theoretical framework for prediction of transcription factor binding sites. by Timothy E Reddy, Charles DeLisi, Boris E Shakhnovich

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Clustering gene expression time series data using an infinite Gaussian process mixture model. by Ian C McDowell, Dinesh Manandhar, Christopher M Vockley, Amy K Schmid, Timothy E Reddy, Barbara E Engelhardt

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Transversions have larger regulatory effects than transitions by Cong Guo, Ian C. McDowell, Michael Nodzenski, Denise M. Scholtens, Andrew S. Allen, William L. Lowe, Timothy E. Reddy

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Genome-wide quantification of the effects of DNA methylation on human gene regulation by Amanda J Lea, Christopher M Vockley, Rachel A Johnston, Christina A Del Carpio, Luis B Barreiro, Timothy E Reddy, Jenny Tung

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Analysis of DNA methylation in a three-generation family reveals widespread genetic influence on epigenetic regulation. by Jason Gertz, Katherine E Varley, Timothy E Reddy, Kevin M Bowling, Florencia Pauli, Stephanie L Parker, Katerina S Kucera, Huntington F Willard, Richard M Myers

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Causal network inference from gene transcriptional time-series response to glucocorticoids. by Jonathan Lu, Bianca Dumitrascu, Ian C McDowell, Brian Jo, Alejandro Barrera, Linda K Hong, Sarah M Leichter, Timothy E Reddy, Barbara E Engelhardt

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Human genome-wide measurement of drug-responsive regulatory activity by Graham D. Johnson, Alejandro Barrera, Ian C. McDowell, Anthony M. D’Ippolito, William H. Majoros, Christopher M. Vockley, Xingyan Wang, Andrew S. Allen, Timothy E. Reddy

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Master Regulators and Cofactors of Human Neuronal Cell Fate Specification Identified by CRISPR Gene Activation Screens by Joshua B. Black, Sean R. McCutcheon, Shataakshi Dube, Alejandro Barrera, Tyler S. Klann, Grayson A. Rice, Shaunak S. Adkar, Scott H. Soderling, Timothy E. Reddy, Charles A. Gersbach

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Evaluation of chromatin accessibility in prefrontal cortex of individuals with schizophrenia by Julien Bryois, Melanie E. Garrett, Lingyun Song, Alexias Safi, Paola Giusti-Rodriguez, Graham D. Johnson, Annie W. Shieh, Alfonso Buil, John F. Fullard, Panos Roussos, Pamela Sklar, Schahram Akbarian, Vahram Haroutunian, Craig A. Stockmeier, Gregory A. Wray, Kevin P. White, Chunyu Liu, Timothy E. Reddy, Allison Ashley-Koch, Patrick F. Sullivan, Gregory E. Crawford

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Mediator kinase inhibition impedes transcriptional plasticity and prevents resistance to ERK/MAPK-targeted therapy in KRAS-mutant cancers by Daniel P. Nussbaum, Colin A. Martz, Andrew M. Waters, Alejandro Barrera, Annie Liu, Justine C. Rutter, Christian G. Cerda-Smith, Amy E. Stewart, Chao Wu, Merve Cakir, Cecilia B. Levandowski, David E. Kantrowitz, Shannon J. McCall, Mariaelena Pierobon, Emanuel F. Petricoin, J. Joshua Smith, Timothy E. Reddy, Channing J. Der, Dylan J. Taatjes, Kris C. Wood

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