Multi-Label Random Forest Model for Tuberculosis Drug Resistance Classification and Mutation Ranking by Samaneh Kouchaki, Yang Yang, Yang Yang, Alexander Lachapelle, Timothy M. Walker, Timothy M. Walker, Timothy M. Walker, A. Sarah Walker, A. Sarah Walker, A. Sarah Walker, CRyPTIC Consortium, Timothy E. A. Peto, Timothy E. A. Peto, Timothy E. A. Peto, Derrick W. Crook, Derrick W. Crook, Derrick W. Crook, David A. Clifton

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Pathogen-based precision medicine for drug-resistant tuberculosis. by Matthias I Gröschel, Timothy M Walker, Tjip S van der Werf, Christoph Lange, Stefan Niemann, Matthias Merker

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In silico evaluation of WHO-endorsed molecular methods to detect drug resistant tuberculosis by Alice Brankin, Marva Seifert, Sophia B. Georghiou, Timothy M. Walker, Swapna Uplekar, Anita Suresh, Rebecca E. Colman

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Case Report: Disseminated, rifampicin resistant Mycobacterium bovis (BCG) infection in an immunocompromised child [version 1; peer review: 2 approved] by Simon B. Drysdale, Dominic F. Kelly, Marcus Morgan, Tim Peto, Derrick Crook, Philippa C. Matthews, Timothy M. Walker

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Genomic insights into anthropozoonotic tuberculosis in captive sun bears (Helarctos malayanus) and an Asiatic black bear (Ursus thibetanus) in Cambodia by Kirsty Officer, Timothy M. Walker, Sokleaph Cheng, Seiha Heng, Mallorie Hidé, Anne-Laure Bañuls, Jonathan Cracknell, Nev Broadis, Nhim Thy, Sam Abraham, Kris Warren, Bethany Jackson

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Using hospital network-based surveillance for antimicrobial resistance as a more robust alternative to self-reporting. by Tjibbe Donker, Timo Smieszek, Katherine L Henderson, Timothy M Walker, Russell Hope, Alan P Johnson, Neil Woodford, Derrick W Crook, Tim E A Peto, A Sarah Walker, Julie V Robotham

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Mycobacterium tuberculosis transmission in Birmingham, UK, 2009–19: An observational study by Timothy M. Walker, Marc Choisy, Martin Dedicoat, Philip G. Drennan, David Wyllie, Fan Yang-Turner, Derrick W. Crook, Esther R. Robinson, A. Sarah Walker, E. Grace Smith, Timothy E.A. Peto

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Transmission of community- and hospital-acquired SARS-CoV-2 in hospital settings in the UK: A cohort study. by Yin Mo, David W Eyre, Sheila F Lumley, Timothy M Walker, Robert H Shaw, Denise O'Donnell, Lisa Butcher, Katie Jeffery, Christl A Donnelly, Oxford COVID infection review team, Ben S Cooper

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Updating the WHO target product profile for next-generation Mycobacterium tuberculosis drug susceptibility testing at peripheral centres. by Emily Lai-Ho MacLean, Paolo Miotto, Lice González Angulo, Matteo Chiacchiaretta, Timothy M Walker, Martina Casenghi, Camilla Rodrigues, Timothy C Rodwell, Philip Supply, Emmanuel André, Mikashmi Kohli, Morten Ruhwald, Daniela Maria Cirillo, Nazir Ismail, Matteo Zignol

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A crowd of BashTheBug volunteers reproducibly and accurately measure the minimum inhibitory concentrations of 13 antitubercular drugs from photographs of 96-well broth microdilutio... by Philip W Fowler, Carla Wright, Helen Spiers, Tingting Zhu, Elisabeth ML Baeten, Sarah W Hoosdally, Ana L Gibertoni Cruz, Aysha Roohi, Samaneh Kouchaki, Timothy M Walker, Timothy EA Peto, Grant Miller, Chris Lintott, David Clifton, Derrick W Crook, A Sarah Walker, The Zooniverse Volunteer Community, The CRyPTIC Consortium

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Stringent thresholds in SARS-CoV-2 IgG assays lead to under-detection of mild infections by David W. Eyre, Sheila F. Lumley, Denise O’Donnell, Nicole E. Stoesser, Philippa C. Matthews, Alison Howarth, Stephanie B. Hatch, Brian D. Marsden, Stuart Cox, Tim James, Richard J. Cornall, David I. Stuart, Gavin Screaton, Daniel Ebner, Derrick W. Crook, Christopher P. Conlon, Katie Jeffery, Timothy M. Walker, Timothy E. A. Peto

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Spatial Analysis of Drug-Susceptible and Multidrug-Resistant Cases of Tuberculosis, Ho Chi Minh City, Vietnam, 2020–2023 by Ruan Spies, Hanh N. Hong, Phu P. Trieu, Luong K. Lan, Kim Lan, N.N. Hue, Nguyen T.L. Huong, Tran T.L.N. Thao, Nguyen L. Quang, Thu D.D. Anh, Truong V. Vinh, Dang T.M. Ha, Phan T. Dat, Nguyen P. Hai, Le H. Van, Guy E. Thwaites, Nguyen T.T. Thuong, James A. Watson, Timothy M. Walker

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The effect of M. tuberculosis lineage on clinical phenotype. by Duc Hong Du, Ronald B Geskus, Yanlin Zhao, Luigi Ruffo Codecasa, Daniela Maria Cirillo, Reinout van Crevel, Dyshelly Nurkartika Pascapurnama, Lidya Chaidir, Stefan Niemann, Roland Diel, Shaheed Vally Omar, Louis Grandjean, Sakib Rokadiya, Arturo Torres Ortitz, Nguyễn Hữu Lân, Đặng Thị Minh Hà, E Grace Smith, Esther Robinson, Martin Dedicoat, Le Thanh Hoang Nhat, Guy E Thwaites, Le Hong Van, Nguyen Thuy Thuong Thuong, Timothy M Walker

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Correction: Corrigendum: Rapid antibiotic-resistance predictions from genome sequence data for Staphylococcus aureus and Mycobacterium tuberculosis by Phelim Bradley, N. Claire Gordon, Timothy M. Walker, Laura Dunn, Simon Heys, Bill Huang, Sarah Earle, Louise J. Pankhurst, Luke Anson, Mariateresa de Cesare, Paolo Piazza, Antonina A. Votintseva, Tanya Golubchik, Daniel J. Wilson, David H. Wyllie, Roland Diel, Stefan Niemann, Silke Feuerriegel, Thomas A. Kohl, Nazir Ismail, Shaheed V. Omar, E. Grace Smith, David Buck, Gil McVean, A. Sarah Walker, Tim E. A. Peto, Derrick W. Crook, Zamin Iqbal

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Antibiotic resistance prediction for Mycobacterium tuberculosis from genome sequence data with Mykrobe [version 1; peer review: 2 approved, 1 approved with reservations] by Martin Hunt, Phelim Bradley, Simon Grandjean Lapierre, Simon Heys, Mark Thomsit, Michael B. Hall, Kerri M. Malone, Penelope Wintringer, Timothy M. Walker, Daniela M. Cirillo, Iñaki Comas, Maha R. Farhat, Phillip Fowler, Jennifer Gardy, Nazir Ismail, Thomas A. Kohl, Vanessa Mathys, Matthias Merker, Stefan Niemann, Shaheed Vally Omar, Vitali Sintchenko, Grace Smith, Dick van Soolingen, Philip Supply, Sabira Tahseen, Mark Wilcox, Irena Arandjelovic, Tim E. A. Peto, Derrick W. Crook, Zamin Iqbal

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Wearable devices for remote monitoring of hospitalized patients with COVID-19 in Vietnam [version 2; peer review: 2 approved, 1 approved with reservations] by Nguyen Van Hao, Nguyen Thanh Phong, Jacob McKnight, Phung Tran Huy Nhat, Nguyen Thanh Truong, C Louise Thwaites, Nguyen Thanh Dung, Phan Nguyen Quoc Khanh Khanh, Nguyen Le Nhu Tung, Truong Ngoc Trung, Ho Bich Hai, Hoang Minh Tu Van, Dao Bach Khoa, Duong Bich Thuy, Pham Kieu Ngyuyet Oanh, Tran Thi Dong Vien, Nguyen Thanh Nguyen, Tran Dang Khoa, Timothy M Walker, Julie Huynh, Luu Phuoc An, Jennifer Van Nuil, Le Mau Toan, Nguyen Van Vinh Chau, Le Van Tan

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Differential occupational risks to healthcare workers from SARS-CoV-2 observed during a prospective observational study by David W Eyre, Sheila F Lumley, Denise O'Donnell, Mark Campbell, Elizabeth Sims, Elaine Lawson, Fiona Warren, Tim James, Stuart Cox, Alison Howarth, George Doherty, Stephanie B Hatch, James Kavanagh, Kevin K Chau, Philip W Fowler, Jeremy Swann, Denis Volk, Fan Yang-Turner, Nicole Stoesser, Philippa C Matthews, Maria Dudareva, Timothy Davies, Robert H Shaw, Leon Peto, Louise O Downs, Alexander Vogt, Ali Amini, Bernadette C Young, Philip George Drennan, Alexander J Mentzer, Donal T Skelly, Fredrik Karpe, Matt J Neville, Monique Andersson, Andrew J Brent, Nicola Jones, Lucas Martins Ferreira, Thomas Christott, Brian D Marsden, Sarah Hoosdally, Richard Cornall, Derrick W Crook, David I Stuart, Gavin Screaton, Oxford University Hospitals Staff Testing Group, Timothy EA Peto, Bruno Holthof, Anne-Marie O'Donnell, Daniel Ebner, Christopher P Conlon, Katie Jeffery, Timothy M Walker

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The 2021 WHO catalogue of Mycobacterium tuberculosis complex mutations associated with drug resistance: a genotypic analysis by Timothy M Walker, DPhil, Paolo Miotto, PhD, Claudio U Köser, PhD, Philip W Fowler, PhD, Jeff Knaggs, BSc, Zamin Iqbal, DPhil, Martin Hunt, PhD, Leonid Chindelevitch, PhD, Maha R Farhat, MD, Daniela Maria Cirillo, PhD, Iñaki Comas, PhD, James Posey, PhD, Shaheed V Omar, PhD, Timothy EA Peto, ProfFRCP, Anita Suresh, MSc, Swapna Uplekar, PhD, Sacha Laurent, PhD, Rebecca E Colman, PhD, Carl-Michael Nathanson, PhD, Matteo Zignol, MD, Ann Sarah Walker, ProfPhD, Derrick W Crook, ProfFRCPath, Nazir Ismail, FRCPath [SA], Timothy C Rodwell, ProfMD, A Sarah Walker, Adrie J C Steyn, Ajit Lalvani, Alain Baulard, Alan Christoffels, Alberto Mendoza-Ticona, Alberto Trovato, Alena Skrahina, Alexander S Lachapelle, Alice Brankin, Amy Piatek, Ana Gibertoni Cruz, Anastasia Koch, Andrea Maurizio Cabibbe, Andrea Spitaleri, Angela P Brandao, Angkana Chaiprasert, Anita Suresh, Anna Barbova, Annelies Van Rie, Arash Ghodousi, Arnold Bainomugisa, Ayan Mandal, Aysha Roohi, Babak Javid, Baoli Zhu, Brice Letcher, Camilla Rodrigues, Camus Nimmo, Carl-Michael NATHANSON, Carla Duncan, Christopher Coulter, Christian Utpatel, Chunfa Liu, Clara Grazian, Clare Kong, Claudio U Köser, Daniel J Wilson, Daniela Maria Cirillo, Daniela Matias, Danielle Jorgensen, Danila Zimenkov, Darren Chetty, David AJ Moore, David A Clifton, Derrick W Crook, Dick van Soolingen, Dongxin Liu, Donna Kohlerschmidt, Draurio Barreira, Dumisani Ngcamu, Elias David Santos Lazaro, Ellis Kelly, Emanuele Borroni, Emma Roycroft, Emmanuel Andre, Erik C Böttger, Esther Robinson, Fabrizio Menardo, Flavia F Mendes, Frances B Jamieson, Francesc Coll, George Fu Gao, George W Kasule, Gian Maria Rossolini, Gillian Rodger, E Grace Smith, Graeme Meintjes, Guy Thwaites, Harald Hoffmann, Heidi Albert, Helen Cox, Ian F Laurenson, Iñaki Comas, Irena Arandjelovic, Ivan Barilar, Jaime Robledo, James Millard, James Johnston, Jamie Posey, Jason R Andrews, Jeff Knaggs, Jennifer Gardy, Jennifer Guthrie, Jill Taylor, Jim Werngren, John Metcalfe, Jorge Coronel, Joseph Shea, Joshua Carter, Juliana MW Pinhata, Julianne V Kus, Katharina Todt, Kathryn Holt, Kayzad S Nilgiriwala, Kelen T Ghisi, Kerri M Malone, Kiatichai Faksri, Kimberlee A Musser, Lavania Joseph, Leen Rigouts, Leonid Chindelevitch, Lisa Jarrett, Louis Grandjean, Lucilaine Ferrazoli, Mabel Rodrigues, Maha Farhat, Marco Schito, Margaret M Fitzgibbon, Marguerite Massinga Loembé, Maria Wijkander, Marie Ballif, Marie-Sylvianne Rabodoarivelo, Marina Mihalic, Mark WILCOX, Martin Hunt, Matteo ZIGNOL, Matthias Merker, Matthias Egger, Max O'Donnell, Maxine Caws, Mei-Hua Wu, Michael G Whitfield, Michael Inouye, Mikael Mansjö, Minh Ha Dang Thi, Moses Joloba, SM Mostofa Kamal, Nana Okozi, Nazir ISMAIL, Nerges Mistry, Nhung N Hoang, Niaina Rakotosamimanana, Nicholas I Paton, Paola M V Rancoita, Paolo Miotto, Pascal Lapierre, Patricia J Hall, Patrick Tang, Pauline Claxton, Penelope Wintringer, Peter M Keller, Phan Vuong Khac Thai, Philip W Fowler, Philip Supply, Prapaporn Srilohasin, Prapat Suriyaphol, Priti Rathod, Priti Kambli, Ramona Groenheit, Rebecca E Colman, Rick Twee-Hee Ong, Robin M Warren, Robert J Wilkinson, Roland Diel, Rosangela S Oliveira, Rukhsar Khot, Ruwen Jou, Sabira Tahseen, Sacha Laurent, Saheer Gharbia, Samaneh Kouchaki, Sanchi Shah, Sara Plesnik, Sarah G Earle, Sarah Dunstan, Sarah J Hoosdally, Satoshi Mitarai, Sebastien Gagneux, Shaheed V Omar, Shen-Yuan Yao, Simon Grandjean Lapierre, Simone Battaglia, Stefan Niemann, Sushil Pandey, Swapna Uplekar, Tanya A Halse, Ted Cohen, Teresa Cortes, Therdsak Prammananan, Thomas A Kohl, Nguyen T T Thuong, Tik Ying Teo, Timothy E A Peto, Timothy C Rodwell, Timothy William, Timothy M Walker, Thomas R Rogers, Utkarsha Surve, Vanessa Mathys, Victoria Furió, Victoria Cook, Srinivasan Vijay, Vincent Escuyer, Viola Dreyer, Vitali Sintchenko, Vonthanak Saphonn, Walter Solano, Wan-Hsuan Lin, Wayne van Gemert, Wencong He, Yang Yang, Yanlin Zhao, Youwen Qin, Yu-Xin Xiao, Zahra Hasan, Zamin Iqbal, Zully M Puyen

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