ArrayTrack: a free FDA bioinformatics tool to support emerging biomedical research -- an update by Xu Joshua, Kelly Reagan, Fang Hong, Tong Weida

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GOFFA: Gene Ontology For Functional Analysis – A FDA Gene Ontology Tool for Analysis of Genomic and Proteomic Data by Sun Hongmei, Fang Hong, Chen Tao, Perkins Roger, Tong Weida

Meta-analysis of microarray data using a pathway-based approach identifies a 37-gene expression signature for systemic lupus erythematosus in human peripheral blood mononuclear cel... by Fang Hong, Mummaneni Padmaja, Tong Weida, Arasappan Dhivya, Amur Shashi

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Mining FDA drug labels using an unsupervised learning technique - topic modeling by Xu Xiaowei, Fang Hong, Liu Zhichao, Bisgin Halil, Tong Weida

Very Important Pool (VIP) genes – an application for microarray-based molecular signatures by Perkins Roger, Shi Leming, Fang Hong, Hong Huixiao, Su Zhenqiang, Tong Weida

Selecting a single model or combining multiple models for microarray-based classifier development? – A comparative analysis based on large and diverse datasets generated from the M... by Fang Hong, Perkins Roger, Kelly Reagan, Shi Leming, Chen Minjun, Tong Weida

Microarray analysis distinguishes differential gene expression patterns from large and small colony <it>Thymidine kinase </it>mutants of L5178Y mouse lymphoma cells by Han Tao, Wang Jianyong, Tong Weida, Moore Martha M, Fuscoe James C, Chen Tao

Constructing a robust protein-protein interaction network by integrating multiple public databases by Ding Don, Tong Weida, Fang Hong, Ye Yanbin, Su Zhenqiang, Guo Li, Liu Zhichao, Martha Venkata-Swamy, Xu Xiaowei

The EDKB: an established knowledge base for endocrine disrupting chemicals by Bearden Edward D, Harris Steve, Perkins Roger, Hong Huixiao, Fang Hong, Xu Lei, Ding Don, Shi Leming, Tong Weida

SNPTrack^TM : an integrated bioinformatics system for genetic association studies by Xu Joshua, Kelly Reagan, Zhou Guangxu, Turner Steven A, Ding Don, Harris Stephen C, Hong Huixiao, Fang Hong, Tong Weida

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Maximum predictive power of the microarray-based models for clinical outcomes is limited by correlation between endpoint and gene expression profile by Zhao Chen, Shi Leming, Tong Weida, Shaughnessy John D, Oberthuer André, Pusztai Lajos, Deng Youping, Symmans W Fraser, Shi Tieliu

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Maximizing biomarker discovery by minimizing gene signatures by Chang Chang, Wang Junwei, Zhao Chen, Fostel Jennifer, Tong Weida, Bushel Pierre R, Deng Youping, Pusztai Lajos, Symmans W Fraser, Shi Tieliu

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Assessing batch effects of genotype calling algorithm BRLMM for the Affymetrix GeneChip Human Mapping 500 K array set using 270 HapMap samples by Kaput Jim, Han Tao, Chen James J, Xu Joshua, Fang Hong, Perkins Roger, Shi Leming, Ge Weigong, Su Zhenqiang, Hong Huixiao, Fuscoe James C, Tong Weida

atBioNet– an integrated network analysis tool for genomics and biomarker discovery by Ding Yijun, Chen Minjun, Liu Zhichao, Ding Don, Ye Yanbin, Zhang Min, Kelly Reagan, Guo Li, Su Zhenqiang, Harris Stephen C, Qian Feng, Ge Weigong, Fang Hong, Xu Xiaowei, Tong Weida

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An FDA bioinformatics tool for microbial genomics research on molecular characterization of bacterial foodborne pathogens using microarrays by Turner Steve, Ye Yanbin, Su Zhenqiang, Chen James, Foley Steven, Nayak Rajesh, Zou Wen, Frye Jonathan G, Patel Isha R, Jackson Scott A, Ding Don, Xu Joshua, Fang Hong, Harris Steve, Zhou Guangxu, Cerniglia Carl, Tong Weida

Microarray scanner calibration curves: characteristics and implications by Xu Z Alex, Chen James J, Branham William S, Guo Lei, Goodsaid Federico M, Frueh Felix W, Fang Hong, Puri Raj K, Han Jing, Han Tao, Su Zhenqiang, Tong Weida, Shi Leming, Harris Stephen C, Hong Huixiao, Xie Qian, Perkins Roger G, Fuscoe James C

The balance of reproducibility, sensitivity, and specificity of lists of differentially expressed genes in microarray studies by Su Zhenqiang, Shippy Richard, Puri Raj K, Peterson Ron L, Mei Nan, Ma Yunqing, Luo Yuling, Li Quan-Zhen, Kawasaki Ernest S, Hong Huixiao, Herman Damir, Han Jing, Guo Xu, Fuscoe James C, Frueh Felix W, Fan Xiao-hui, Collins Patrick J, Chu Tzu-Ming, Bertholet Vincent, Cao Xiaoxi, Bao Wenjun, Barbacioru Catalin C, Amur Shashi, Qian Feng, Fang Hong, Boysen Cecilie, Croner Lisa J, Guo Lei, Goodsaid Federico M, Perkins Roger G, Harris Stephen C, Jensen Roderick V, Jones Wendell D, Shi Leming, Sun Yongming, Sun Hongmei, Thorn Brett, Turpaz Yaron, Wang Charles, Wang Sue, Warrington Janet A, Willey James C, Wu Jie, Xie Qian, Zhang Liang, Zhang Lu, Zhong Sheng, Wolfinger Russell D, Tong Weida