Using likelihood-free inference to compare evolutionary dynamics of the protein networks of H. pylori and P. falciparum. by Oliver Ratmann, Ole Jørgensen, Trevor Hinkley, Michael Stumpf, Sylvia Richardson, Carsten Wiuf

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Recombination accelerates adaptation on a large-scale empirical fitness landscape in HIV-1. by Danesh Moradigaravand, Roger Kouyos, Trevor Hinkley, Mojgan Haddad, Christos J Petropoulos, Jan Engelstädter, Sebastian Bonhoeffer

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Exploring the complexity of the HIV-1 fitness landscape. by Roger D Kouyos, Gabriel E Leventhal, Trevor Hinkley, Mojgan Haddad, Jeannette M Whitcomb, Christos J Petropoulos, Sebastian Bonhoeffer

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Estimating the fitness cost of escape from HLA presentation in HIV-1 protease and reverse transcriptase. by Rafal Mostowy, Roger D Kouyos, Ilka Hoof, Trevor Hinkley, Mojgan Haddad, Jeannette M Whitcomb, Christos J Petropoulos, Can Keşmir, Sebastian Bonhoeffer

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Persistence of transmitted HIV-1 drug resistance mutations associated with fitness costs and viral genetic backgrounds. by Wan-Lin Yang, Roger D Kouyos, Jürg Böni, Sabine Yerly, Thomas Klimkait, Vincent Aubert, Alexandra U Scherrer, Mohaned Shilaih, Trevor Hinkley, Christos Petropoulos, Sebastian Bonhoeffer, Huldrych F Günthard, Swiss HIV Cohort Study (SHCS)

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Assessing predicted HIV-1 replicative capacity in a clinical setting. by Roger D Kouyos, Viktor von Wyl, Trevor Hinkley, Christos J Petropoulos, Mojgan Haddad, Jeannette M Whitcomb, Jürg Böni, Sabine Yerly, Cristina Cellerai, Thomas Klimkait, Huldrych F Günthard, Sebastian Bonhoeffer, Swiss HIV Cohort Study

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