Transcriptome-based biomarker prediction for Parkinson’s disease using genome-scale metabolic modeling by Ecehan Abdik, Tunahan Çakır

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Working together by Regan Odongo, Tunahan Çakır

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Deciphering Antibiotic-Targeted Metabolic Pathways in <i>Acinetobacter baumannii</i>: Insights from Transcriptomics and Genome-Scale Metabolic Modeling by Fatma Zehra Sarı, Tunahan Çakır

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JacLy: a Jacobian-based method for the inference of metabolic interactions from the covariance of steady-state metabolome data by Mohammad Jafar Khatibipour, Furkan Kurtoğlu, Tunahan Çakır

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A network-based drug prioritization and combination analysis for the MEK5/ERK5 pathway in breast cancer by Regan Odongo, Asuman Demiroglu-Zergeroglu, Tunahan Çakır

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Genome-Wide Analysis of Yeast Metabolic Cycle through Metabolic Network Models Reveals Superiority of Integrated ATAC-seq Data over RNA-seq Data by Müberra Fatma Cesur, Tunahan Çakır, Pınar Pir

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Dual transcriptome based reconstruction of Salmonella-human integrated metabolic network to screen potential drug targets by Kadir Kocabaş, Alina Arif, Reaz Uddin, Tunahan Çakır

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Dual transcriptome based reconstruction of Salmonella-human integrated metabolic network to screen potential drug targets. by Kadir Kocabaş, Alina Arif, Reaz Uddin, Tunahan Çakır

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Novel Approaches for Systems Biology of Metabolism-Oriented Pathogen-Human Interactions: A Mini-Review by Tunahan Çakır, Gianni Panagiotou, Reaz Uddin, Saliha Durmuş

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Microalgae growth and diversity in anaerobic digestate compared to synthetic media by Hande Ermis, Ünzile Güven-Gülhan, Tunahan Çakır, Mahmut Altınbaş

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Network-Based Metabolism-Centered Screening of Potential Drug Targets in Klebsiella pneumoniae at Genome Scale by Müberra Fatma Cesur, Bushra Siraj, Reaz Uddin, Saliha Durmuş, Tunahan Çakır

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Validation of an In-Vitro Parkinson’s Disease Model for the Study of Neuroprotection by Esra Nur Yiğit, Ekin Sönmez, Melis Savaşan Söğüt, Tunahan Çakır, Işıl Aksan Kurnaz

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Six potential biomarkers for bladder cancer: key proteins in cell-cycle division and apoptosis pathways by Güldal Inal Gültekin, Özlem Timirci Kahraman, Murat Işbilen, Saliha Durmuş, Tunahan Çakir, İlhan Yaylim, Turgay Isbir

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A benchmark of RNA-seq data normalization methods for transcriptome mapping on human genome-scale metabolic networks by Hatice Büşra Lüleci, Dilara Uzuner, Müberra Fatma Cesur, Atılay İlgün, Elif Düz, Ecehan Abdik, Regan Odongo, Tunahan Çakır

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