Transcriptome-based biomarker prediction for Parkinson’s disease using genome-scale metabolic modeling by Ecehan Abdik, Tunahan Çakır

Get full text

Working together by Regan Odongo, Tunahan Çakır

Get full text

Systematic analysis of transcription-level effects of neurodegenerative diseases on human brain metabolism by a newly reconstructed brain-specific metabolic network by Mustafa Sertbaş, Kutlu Ülgen, Tunahan Çakır

Get full text

Sparsity as cellular objective to infer directed metabolic networks from steady-state metabolome data: a theoretical analysis. by Melik Öksüz, Hasan Sadıkoğlu, Tunahan Çakır

Get full text

A systems pharmacology approach based on oncogenic signalling pathways to determine the mechanisms of action of natural products in breast cancer from transcriptome data by Regan Odongo, Asuman Demiroglu-Zergeroglu, Tunahan Çakır

Get full text

JacLy: a Jacobian-based method for the inference of metabolic interactions from the covariance of steady-state metabolome data by Mohammad Jafar Khatibipour, Furkan Kurtoğlu, Tunahan Çakır

Get full text

A network-based drug prioritization and combination analysis for the MEK5/ERK5 pathway in breast cancer by Regan Odongo, Asuman Demiroglu-Zergeroglu, Tunahan Çakır

Get full text

Genome-Wide Analysis of Yeast Metabolic Cycle through Metabolic Network Models Reveals Superiority of Integrated ATAC-seq Data over RNA-seq Data by Müberra Fatma Cesur, Tunahan Çakır, Pınar Pir

Get full text

Dual transcriptome based reconstruction of Salmonella-human integrated metabolic network to screen potential drug targets by Kadir Kocabaş, Alina Arif, Reaz Uddin, Tunahan Çakır

Get full text

Dual transcriptome based reconstruction of Salmonella-human integrated metabolic network to screen potential drug targets. by Kadir Kocabaş, Alina Arif, Reaz Uddin, Tunahan Çakır

Get full text

Novel Approaches for Systems Biology of Metabolism-Oriented Pathogen-Human Interactions: A Mini-Review by Tunahan Çakır, Gianni Panagiotou, Reaz Uddin, Saliha Durmuş

Get full text

Microalgae growth and diversity in anaerobic digestate compared to synthetic media by Hande Ermis, Ünzile Güven-Gülhan, Tunahan Çakır, Mahmut Altınbaş

Get full text

Network-Based Metabolism-Centered Screening of Potential Drug Targets in Klebsiella pneumoniae at Genome Scale by Müberra Fatma Cesur, Bushra Siraj, Reaz Uddin, Saliha Durmuş, Tunahan Çakır

Get full text

Transcriptional landscape of cellular networks reveal interactions driving the dormancy mechanisms in cancer by Dilara Uzuner, Yunus Akkoç, Nesibe Peker, Pınar Pir, Devrim Gözüaçık, Tunahan Çakır

Get full text

Six potential biomarkers for bladder cancer: key proteins in cell-cycle division and apoptosis pathways by Güldal Inal Gültekin, Özlem Timirci Kahraman, Murat Işbilen, Saliha Durmuş, Tunahan Çakir, İlhan Yaylim, Turgay Isbir

Get full text

Abnormal brain cholesterol homeostasis in Alzheimer’s disease—a targeted metabolomic and transcriptomic study by Vijay R. Varma, H. Büşra Lüleci, Anup M. Oommen, Sudhir Varma, Chad T. Blackshear, Michael E. Griswold, Yang An, Jackson A. Roberts, Richard O’Brien, Olga Pletnikova, Juan C. Troncoso, David A. Bennett, Tunahan Çakır, Cristina Legido-Quigley, Madhav Thambisetty

Get full text