Genomic content of Bordetella pertussis clinical isolates circulating in areas of intensive children vaccination. by Valérie Bouchez, Valérie Caro, Erwan Levillain, Ghislaine Guigon, Nicole Guiso

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MetaGenSense: A web-application for analysis and exploration of high throughput sequencing metagenomic data [version 3; referees: 1 approved, 2 approved with reservations] by Damien Correia, Olivia Doppelt-Azeroual, Jean-Baptiste Denis, Mathias Vandenbogaert, Valérie Caro

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Bordetella pertussis, Finland and France by Valérie Caro, Annika Elomaa, Delphine Brun, Jussi Mertsola, Qiushui He, Nicole Guiso

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MetaGenSense: A web-application for analysis and exploration of high throughput sequencing metagenomic data [version 2; referees: 1 approved, 2 approved with reservations] by Damien Correia, Olivia Doppelt-Azeroual, Jean-Baptiste Denis, Mathias Vandenbogaert, Valérie Caro

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Host alternation is necessary to maintain the genome stability of rift valley fever virus. by Sara Moutailler, Benjamin Roche, Jean-Michel Thiberge, Valérie Caro, François Rougeon, Anna-Bella Failloux

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Autophagy Promotes Infectious Particle Production of Mopeia and Lassa Viruses by Nicolas Baillet, Sophie Krieger, Alexandra Journeaux, Valérie Caro, Frédéric Tangy, Pierre-Olivier Vidalain, Sylvain Baize

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A Six Years (2010–2016) Longitudinal Survey of the Four Serotypes of Dengue Viruses in Lao PDR by Charlotte Balière, Elodie Calvez, Jean-Michel Thiberge, Somphavanh Somlor, Mathias Vandenbogaert, Marc Grandadam, Valérie Caro

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Early MinION™ nanopore single-molecule sequencing technology enables the characterization of hepatitis B virus genetic complexity in clinical samples. by Virginie Sauvage, Laure Boizeau, Daniel Candotti, Mathias Vandenbogaert, Annabelle Servant-Delmas, Valérie Caro, Syria Laperche

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Rapid genotyping protocol to improve dengue virus serotype 2 survey in Lao PDR. by Elodie Calvez, Somphavanh Somlor, Souksakhone Viengphouthong, Charlotte Balière, Phaithong Bounmany, Sitsana Keosenhom, Valérie Caro, Marc Grandadam

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High efficiency of temperate Aedes albopictus to transmit chikungunya and dengue viruses in the Southeast of France. by Anubis Vega-Rua, Karima Zouache, Valerie Caro, Laure Diancourt, Pascal Delaunay, Marc Grandadam, Anna-Bella Failloux

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Worldwide Distribution of Major Clones of Listeria monocytogenes by Viviane Chenal-Francisque, Jodie Lopez, Thomas Cantinelli, Valerie Caro, Coralie Tran, Alexandre Leclercq, Marc Lecuit, Sylvain Brisse

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Genome Analysis of Rift Valley Fever Virus, Mayotte by Catherine Cêtre-Sossah, Hervé Zeller, Marc Grandadam, Valérie Caro, François Pettinelli, Michèle Bouloy, Eric Cardinale, Emmanuel Albina

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Rapid Genomic Characterization of SARS-CoV-2 by Direct Amplicon-Based Sequencing Through Comparison of MinION and Illumina iSeq100TM System by Véronique Hourdel, Aurelia Kwasiborski, Charlotte Balière, Séverine Matheus, Christophe Frédéric Batéjat, Jean-Claude Manuguerra, Jessica Vanhomwegen, Valérie Caro

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Genetic mapping of specific interactions between Aedes aegypti mosquitoes and dengue viruses. by Thanyalak Fansiri, Albin Fontaine, Laure Diancourt, Valérie Caro, Butsaya Thaisomboonsuk, Jason H Richardson, Richard G Jarman, Alongkot Ponlawat, Louis Lambrechts

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E3 Ligase ITCH Interacts with the Z Matrix Protein of Lassa and Mopeia Viruses and Is Required for the Release of Infectious Particles by Nicolas Baillet, Sophie Krieger, Xavier Carnec, Mathieu Mateo, Alexandra Journeaux, Othmann Merabet, Valérie Caro, Frédéric Tangy, Pierre-Olivier Vidalain, Sylvain Baize

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Angiostrongylus cantonensis Infection on Mayotte Island, Indian Ocean, 2007-2012. by Loïc Epelboin, Renaud Blondé, Abdourahim Chamouine, Alexandra Chrisment, Laure Diancourt, Nicolas Villemant, Agnès Atale, Claire Cadix, Valérie Caro, Denis Malvy, Louis Collet

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Molecular characterization of a new highly divergent Mobala related arenavirus isolated from Praomys sp. rodents by Huguette Simo Tchetgna, Stephane Descorps-Declère, Benjamin Selekon, Aurelia Kwasiborski, Mathias Vandenbogaert, Jean-Claude Manuguerra, Antoine Gessain, Valérie Caro, Emmanuel Nakouné, Nicolas Berthet

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Using Background Sequencing Data to Anticipate DENV-1 Circulation in the Lao PDR by Elodie Calvez, Phaithong Bounmany, Charlotte Balière, Somphavanh Somlor, Souksakhone Viengphouthong, Thonglakhone Xaybounsou, Sitsana Keosenhom, Kitphithak Fangkham, Paul T. Brey, Valérie Caro, Vincent Lacoste, Marc Grandadam

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Chikungunya virus emergence in the Lao PDR, 2012-2013. by Somphavanh Somlor, Khamsing Vongpayloth, Laure Diancourt, Philippe Buchy, Veasna Duong, Darouny Phonekeo, Pakapak Ketmayoon, Phengta Vongphrachanh, Paul T Brey, Valérie Caro, Yves Buisson, Marc Grandadam

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Human Polyomavirus Related to African Green Monkey Lymphotropic Polyomavirus by Virginie Sauvage, Vincent Foulongne, Justine Cheval, Meriadeg Ar Gouilh, Kevin Pariente, Olivier Dereure, Jean Claude Manuguerra, Jennifer Richardson, Marc Lecuit, Ana Burguière, Valérie Caro, Marc Eloit

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