Orchestrating single-cell analysis with Bioconductor by Amezquita, R, Lun, A, Becht, E, Carey, V, Carpp, L, Geistlinger, L, Marini, F, Rue-Albrecht, K, Risso, D, Soneson, C, Waldron, L, Pagès, H, Smith, M, Huber, W, Morgan, M, Gottardo, R, Hicks, S

SIMON: open-source knowledge discovery platform by Tomic, A, Tomic, I, Waldron, L, Geistlinger, L, Kuhn, M, Spreng, RL, Dahora, LC, Seaton, KE, Tomaras, G, Hill, J, Duggal, NA, Pollock, RD, Lazarus, NR, Harridge, SDR, Lord, JM, Khatri, P, Pollard, AJ, Davis, MM

BugSigDB captures patterns of differential abundance across a broad range of host-associated microbial signatures by Geistlinger, L, Mirzayi, C, Zohra, F, Azhar, R, Elsafoury, S, Grieve, C, Wokaty, J, Gamboa-Tuz, SD, Sengupta, P, Hecht, I, Ravikrishnan, A, Gonçalves, RS, Franzosa, E, Raman, K, Carey, V, Dowd, JB, Jones, HE, Davis, S, Segata, N, Huttenhower, C, Waldron, L