A quick guide to organizing computational biology projects. by William Stafford Noble

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Ten simple rules for defining a computational biology project by William Stafford Noble

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Ten simple rules for defining a computational biology project. by William Stafford Noble

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A multi-species benchmark for training and validating mass spectrometry proteomics machine learning models by Bo Wen, William Stafford Noble

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Computational and statistical analysis of protein mass spectrometry data. by William Stafford Noble, Michael J MacCoss

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A pitfall for machine learning methods aiming to predict across cell types by Jacob Schreiber, Ritambhara Singh, Jeffrey Bilmes, William Stafford Noble

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Matrix prior for data transfer between single cell data types in latent Dirichlet allocation. by Alan Min, Timothy Durham, Louis Gevirtzman, William Stafford Noble

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High resolution models of transcription factor-DNA affinities improve in vitro and in vivo binding predictions. by Phaedra Agius, Aaron Arvey, William Chang, William Stafford Noble, Christina Leslie

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Sequence-to-sequence translation from mass spectra to peptides with a transformer model by Melih Yilmaz, William E. Fondrie, Wout Bittremieux, Carlo F. Melendez, Rowan Nelson, Varun Ananth, Sewoong Oh, William Stafford Noble

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MetaGOmics: A Web-Based Tool for Peptide-Centric Functional and Taxonomic Analysis of Metaproteomics Data by Michael Riffle, Damon H. May, Emma Timmins-Schiffman, Molly P. Mikan, Daniel Jaschob, William Stafford Noble, Brook L. Nunn

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Proteome-Wide Identification of RNA-dependent proteins and an emerging role for RNAs in Plasmodium falciparum protein complexes by Thomas Hollin, Steven Abel, Charles Banks, Borislav Hristov, Jacques Prudhomme, Kianna Hales, Laurence Florens, William Stafford Noble, Karine G. Le Roch

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Cross-species imputation and comparison of single-cell transcriptomic profiles by Ran Zhang, Mu Yang, Jacob Schreiber, Diana R. O’Day, James M. A. Turner, Jay Shendure, William Stafford Noble, Christine M. Disteche, Xinxian Deng

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Novel insights into the role of long non-coding RNA in the human malaria parasite, Plasmodium falciparum by Gayani Batugedara, Xueqing M. Lu, Borislav Hristov, Steven Abel, Zeinab Chahine, Thomas Hollin, Desiree Williams, Tina Wang, Anthony Cort, Todd Lenz, Trevor A. Thompson, Jacques Prudhomme, Abhai K. Tripathi, Guoyue Xu, Juliana Cudini, Sunil Dogga, Mara Lawniczak, William Stafford Noble, Photini Sinnis, Karine G. Le Roch

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Chromatin alternates between A and B compartments at kilobase scale for subgenic organization by Hannah L. Harris, Huiya Gu, Moshe Olshansky, Ailun Wang, Irene Farabella, Yossi Eliaz, Achyuth Kalluchi, Akshay Krishna, Mozes Jacobs, Gesine Cauer, Melanie Pham, Suhas S. P. Rao, Olga Dudchenko, Arina Omer, Kiana Mohajeri, Sungjae Kim, Michael H. Nichols, Eric S. Davis, Dimos Gkountaroulis, Devika Udupa, Aviva Presser Aiden, Victor G. Corces, Douglas H. Phanstiel, William Stafford Noble, Guy Nir, Michele Di Pierro, Jeong-Sun Seo, Michael E. Talkowski, Erez Lieberman Aiden, M. Jordan Rowley

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