SARS-CoV-2 Within-Host and in vitro Genomic Variability and Sub-Genomic RNA Levels Indicate Differences in Viral Expression Between Clinical Cohorts and in vitro Culture by Jessica E. Agius, Jessica E. Agius, Jessica E. Agius, Jessica C. Johnson-Mackinnon, Jessica C. Johnson-Mackinnon, Jessica C. Johnson-Mackinnon, Winkie Fong, Winkie Fong, Mailie Gall, Mailie Gall, Connie Lam, Kerri Basile, Jen Kok, Jen Kok, Alicia Arnott, Alicia Arnott, Alicia Arnott, Vitali Sintchenko, Vitali Sintchenko, Vitali Sintchenko, Vitali Sintchenko, Rebecca J. Rockett, Rebecca J. Rockett, Rebecca J. Rockett

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SABRes: in silico detection of drug resistance conferring mutations in subpopulations of SARS-CoV-2 genomes by Winkie Fong, Rebecca J. Rockett, Jessica E. Agius, Shona Chandra, Jessica Johnson-Mckinnon, Eby Sim, Connie Lam, Alicia Arnott, Mailie Gall, Jenny Draper, Susan Maddocks, Sharon Chen, Jen Kok, Dominic Dwyer, Matthew O’Sullivan, Vitali Sintchenko

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A laboratory framework for ongoing optimization of amplification-based genomic surveillance programs by Connie Lam, Jessica Johnson-Mackinnon, Kerri Basile, Winkie Fong, Carl J.E. Suster, Mailie Gall, Jessica Agius, Shona Chandra, Jenny Draper, Elena Martinez, Alexander Drew, Qinning Wang, Sharon C. Chen, Jen Kok, Dominic E. Dwyer, Vitali Sintchenko, Rebecca J. Rockett

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Improved Neutralisation of the SARS-CoV-2 Omicron Variant following a Booster Dose of Pfizer-BioNTech (BNT162b2) COVID-19 Vaccine by Kerri Basile, Rebecca J. Rockett, Kenneth McPhie, Michael Fennell, Jessica Johnson-Mackinnon, Jessica E. Agius, Winkie Fong, Hossinur Rahman, Danny Ko, Linda Donavan, Linda Hueston, Connie Lam, Alicia Arnott, Sharon C.-A. Chen, Susan Maddocks, Matthew V. O’Sullivan, Dominic E. Dwyer, Vitali Sintchenko, Jen Kok

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Co-infection with SARS-CoV-2 Omicron and Delta variants revealed by genomic surveillance by Rebecca J. Rockett, Jenny Draper, Mailie Gall, Eby M. Sim, Alicia Arnott, Jessica E. Agius, Jessica Johnson-Mackinnon, Winkie Fong, Elena Martinez, Alexander P. Drew, Clement Lee, Christine Ngo, Marc Ramsperger, Andrew N. Ginn, Qinning Wang, Michael Fennell, Danny Ko, Linda Hueston, Lukas Kairaitis, Edward C. Holmes, Matthew N. O’Sullivan, Sharon C.-A. Chen, Jen Kok, Dominic E. Dwyer, Vitali Sintchenko

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