Translating the human microbiome: a path to improving health by Xavier, Ramnik J

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Comprehensive analysis of chromosomal mobile genetic elements in the gut microbiome reveals phylum-level niche-adaptive gene pools by Jiang, Xiaofang, Hall, Andrew Brantley, Xavier, Ramnik J., Alm, Eric J.

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Adaptive Evolution within Gut Microbiomes of Healthy People by Zhao, Shijie, Lieberman, Tami, Poyet, Mathilde, Kauffman, Kathryn, Gibbons, Sean M., Groussin, Mathieu, Xavier, Ramnik J., Alm, Eric J

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Gut bacterial metabolites modulate endoplasmic reticulum stress by Ke, Xiaobo, You, Kwontae, Pichaud, Matthieu, Haiser, Henry J., Graham, Daniel B., Vlamakis, Hera, Porter, Jeffrey A., Xavier, Ramnik J.

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Control and Manipulation of Pathogens with an Optical Trap for Live Cell Imaging of Intercellular Interactions by Tam, Jenny M., Castro, Carlos E., Heath, Robert J. W., Cardenas, Michael L., Xavier, Ramnik J., Lang, Matthew J., Vyas, Jatin M.

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Proteins encoded in genomic regions associated with immune-mediated disease physically interact and suggest underlying biology by Rossin, Elizabeth, Lage, Kasper, Raychaudhuri, Soumya, Xavier, Ramnik J., Tatar, Diana, Benita, Yair, International Inflammatory Bowel Disease Genetics Constortium, Cotsapas, Chris, Daly, Mark J.

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Pathogen Cell-to-Cell Variability Drives Heterogeneity in Host Immune Responses by Avraham, Roi, Brown, Douglas, Penaranda, Cristina, Jijon, Humberto B., Trombetta, John J., Satija, Rahul, Xavier, Ramnik J., Hung, Deborah T., Haseley, Nathan Scott, Shalek, Alexander K, Regev, Aviv

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Identifying relationships among genomic disease regions: predicting= pathogenic SNP associations and rare deletions by Raychaudhuri, Soumya, Plenge, Robert M., Rossin, Elizabeth, Ng, Aylwin C. Y., Purcell, Shaun M., Sklar, Pamela, Scolnick, Edward Mark, Xavier, Ramnik J., Altshuler, David, Daly, Mark J.

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Identifying Relationships among Genomic Disease Regions: Predicting Genes at Pathogenic SNP Associations and Rare Deletions by Daly, Mark J., Altshuler, David, Xavier, Ramnik J., Sklar, Pamela, Purcell, Shaun M., International Schizophrenia Consortium, Ng, Aylwin C. Y., Scolnick, Edward Mark, Rossin, Elizabeth, Plenge, Robert M., Raychaudhuri, Soumya

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Invertible promoters mediate bacterial phase variation, antibiotic resistance, and host adaptation in the gut by Jiang, Xiaofang, Hall, A. Brantley, Arthur, Timothy D., Plitchta, Damian R., Covington, Christian T., Poyet, Mathilde, Crothers, Jessica, Moses, Peter L., Tolonen, Andrew C., Vlamakis, Hera, Alm, Eric J., Xavier, Ramnik J.

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Congruent microbiome signatures in fibrosis-prone autoimmune diseases: IgG4-related disease and systemic sclerosis by Plichta, Damian R., Somani, Juhi, Pichaud, Matthieu, Wallace, Zachary S., Fernandes, Ana D., Perugino, Cory A., Lähdesmäki, Harri, Stone, John H., Vlamakis, Hera, Chung, Daniel C., Khanna, Dinesh, Pillai, Shiv, Xavier, Ramnik J.

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Delivery Mode Affects Stability of Early Infant Gut Microbiota by Mitchell, Caroline M, Mazzoni, Chiara, Hogstrom, Larson, Bryant, Allison, Bergerat, Agnes, Cher, Avital, Pochan, Shawna, Herman, Penelope, Carrigan, Maureen, Sharp, Karen, Huttenhower, Curtis, Lander, Eric S, Vlamakis, Hera, Xavier, Ramnik J, Yassour, Moran

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Colon stroma mediates an inflammation-driven fibroblastic response controlling matrix remodeling and healing by Jasso, Guadalupe J, Jaiswal, Alok, Varma, Mukund, Laszewski, Tyler, Grauel, Angelo, Omar, Abdifatah, Silva, Nilsa, Dranoff, Glenn, Porter, Jeffrey A, Mansfield, Keith, Cremasco, Viviana, Regev, Aviv, Xavier, Ramnik J, Graham, Daniel B

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The influence of the gut microbiome on BCG-induced trained immunity by Stražar, Martin, Mourits, Vera P., Koeken, Valerie A. C. M., de Bree, L. C. J., Moorlag, Simone J. C. F. M., Joosten, Leo A. B., van Crevel, Reinout, Vlamakis, Hera, Netea, Mihai G., Xavier, Ramnik J.

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The influence of the gut microbiome on BCG-induced trained immunity by Stražar, Martin, Mourits, Vera P., Koeken, Valerie A. C. M., de Bree, L. C. J., Moorlag, Simone J. C. F. M., Joosten, Leo A. B., van Crevel, Reinout, Vlamakis, Hera, Netea, Mihai G., Xavier, Ramnik J.

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Integrated annotation prioritizes metabolites with bioactivity in inflammatory bowel disease by Bhosle, Amrisha, Bae, Sena, Zhang, Yancong, Chun, Eunyoung, Avila-Pacheco, Julian, Geistlinger, Ludwig, Pishchany, Gleb, Glickman, Jonathan N, Michaud, Monia, Waldron, Levi, Clish, Clary B, Xavier, Ramnik J, Vlamakis, Hera, Franzosa, Eric A, Garrett, Wendy S, Huttenhower, Curtis

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Non-Invasive Mapping of the Gastrointestinal Microbiota Identifies Children with Inflammatory Bowel Disease by Papa, Eli, Docktor, Michael, Smillie, Christopher, Weber, Sarah, Preheim, Sarah Pacocha, Gevers, Dirk, Giannoukos, Georgia, Ciulla, Dawn, Tabbaa, Diana, Ingram, Jay, Schauer, David B., Ward, Doyle V., Korzenik, Joshua R., Xavier, Ramnik J., Bousvaros, Athos, Alm, Eric J.

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Small-molecule enhancers of autophagy modulate cellular disease phenotypes suggested by human genetics by Kuo, Szu-Yu, Castoreno, Adam B., Aldrich, Leslie N., Lassen, Kara G., Goel, Gautam, Dancik, Vlado, Kuballa, Petric, Latorre, Isabel, Conway, Kara L., Sarkar, Sovan, Maetzel, Dorothea, Jaenisch, Rudolf, Clemons, Paul A., Schreiber, Stuart L., Shamji, Alykhan F., Xavier, Ramnik J.

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αv Integrins combine with LC3 and atg5 to regulate Toll-like receptor signalling in B cells by Acharya, Mridu, Sokolovska, Anna, Tam, Jenny M., Conway, Kara L., Stefani, Caroline, Raso, Fiona, Mukhopadhyay, Subhankar, Feliu, Marianela, Paul, Elahna, Savill, John, Hynes, Richard O., Xavier, Ramnik J., Vyas, Jatin M., Stuart, Lynda M., Lacy-Hulbert, Adam, Hynes, Richard O.

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Sub-clinical detection of gut microbial biomarkers of obesity and type 2 diabetes by Yassour, Moran, Lim, Mi Young, Yun, Hyun Sun, Tickle, Timothy L., Sung, Joohon, Song, Yun-Mi, Lee, Kayoung, Franzosa, Eric A., Morgan, Xochitl C., Gevers, Dirk, Xavier, Ramnik J., Birren, Bruce W., Ko, GwangPyo, Huttenhower, Curtis, Lander, Eric Steven

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