iTCep: a deep learning framework for identification of T cell epitopes by harnessing fusion features by Yu Zhang, Yu Zhang, Xingxing Jian, Xingxing Jian, Linfeng Xu, Linfeng Xu, Jingjing Zhao, Manman Lu, Yong Lin, Lu Xie

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Reconstruction of genome-scale metabolic model of Yarrowia lipolytica and its application in overproduction of triacylglycerol by Songsong Wei, Xingxing Jian, Jun Chen, Cheng Zhang, Qiang Hua

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CoV2-TCR: A web server for screening TCR CDR3 from TCR immune repertoire of COVID-19 patients and their recognized SARS-CoV-2 epitopes by Xingxing Jian, Yu Zhang, Jingjing Zhao, Zhuoming Zhao, Manman Lu, Lu Xie

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NAIRscore as a biomarker for the quality of immune response to neoantigens is related with an increased overall survival in multiple myeloma by Xingxing Jian, Linfeng Xu, Jingjing Zhao, Yanhui Wang, Wen Zhou, Lu Xie

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ToPP: Tumor online prognostic analysis platform for prognostic feature selection and clinical patient subgroup selection by Jian Ouyang, Guangrong Qin, Zhenhao Liu, Xingxing Jian, Tieliu Shi, Lu Xie

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Construction and Validation of an Immune Cell Signature Score to Evaluate Prognosis and Therapeutic Efficacy in Hepatocellular Carcinoma by Linfeng Xu, Linfeng Xu, Xingxing Jian, Xingxing Jian, Zhenhao Liu, Zhenhao Liu, Jingjing Zhao, Jingjing Zhao, Siwen Zhang, Siwen Zhang, Yong Lin, Lu Xie, Lu Xie, Lu Xie

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Flux Balance Analysis Inspired Bioprocess Upgrading for Lycopene Production by a Metabolically Engineered Strain of Yarrowia lipolytica by Komi Nambou, Xingxing Jian, Xinkai Zhang, Liujing Wei, Jiajia Lou, Catherine Madzak, Qiang Hua

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Revealing a novel contributing landscape of ferroptosis-related genes in Parkinson’s disease by Xingxing Jian, Guihu Zhao, He Chen, Yanhui Wang, Jinchen Li, Lu Xie, Bin Li

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PGNneo: A Proteogenomics-Based Neoantigen Prediction Pipeline in Noncoding Regions by Xiaoxiu Tan, Linfeng Xu, Xingxing Jian, Jian Ouyang, Bo Hu, Xinrong Yang, Tao Wang, Lu Xie

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dbPepNeo2.0: A Database for Human Tumor Neoantigen Peptides From Mass Spectrometry and TCR Recognition by Manman Lu, Manman Lu, Linfeng Xu, Linfeng Xu, Xingxing Jian, Xingxing Jian, Xiaoxiu Tan, Xiaoxiu Tan, Jingjing Zhao, Jingjing Zhao, Zhenhao Liu, Yu Zhang, Yu Zhang, Chunyu Liu, Chunyu Liu, Lanming Chen, Yong Lin, Lu Xie, Lu Xie, Lu Xie

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Gut microbiota facilitate chronic spontaneous urticaria by Lei Zhu, Xingxing Jian, Bingjing Zhou, Runqiu Liu, Melba Muñoz, Wan Sun, Lu Xie, Xiang Chen, Cong Peng, Marcus Maurer, Jie Li

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ProGeo-Neo v2.0: A One-Stop Software for Neoantigen Prediction and Filtering Based on the Proteogenomics Strategy by Chunyu Liu, Yu Zhang, Xingxing Jian, Xiaoxiu Tan, Manman Lu, Jian Ouyang, Zhenhao Liu, Yuyu Li, Linfeng Xu, Lanming Chen, Yong Lin, Lu Xie

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Intestinal <i>Klebsiella pneumoniae</i> Contributes to Pneumonia by Synthesizing Glutamine in Multiple Myeloma by Yihui Wang, Qin Yang, Yinghong Zhu, Xingxing Jian, Jiaojiao Guo, Jingyu Zhang, Chunmei Kuang, Xiangling Feng, Gang An, Lugui Qiu, Guancheng Li, Yanjuan He, Wen Zhou

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Lung microbiome alterations in NSCLC patients by Leliang Zheng, Ruizheng Sun, Yinghong Zhu, Zheng Li, Xiaoling She, Xingxing Jian, Fenglei Yu, Xueyu Deng, Buqing Sai, Lujuan Wang, Wen Zhou, Minghua Wu, Guiyuan Li, Jingqun Tang, Wei Jia, Juanjuan Xiang

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Alterations of gut microbiome accelerate multiple myeloma progression by increasing the relative abundances of nitrogen-recycling bacteria by Xingxing Jian, Yinghong Zhu, Jian Ouyang, Yihui Wang, Qian Lei, Jiliang Xia, Yongjun Guan, Jingyu Zhang, Jiaojiao Guo, Yanjuan He, Jinuo Wang, Jian Li, Jingchao Lin, Mingming Su, Guancheng Li, Minghua Wu, Lugui Qiu, Juanjuan Xiang, Lu Xie, Wei Jia, Wen Zhou

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