Estimating the total genome length of a metagenomic sample using k-mers por Kui Hua, Xuegong Zhang

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Making genome browsers portable and personal por Aziz Khan, Xuegong Zhang

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The Influence of the Global Gene Expression Shift on Downstream Analyses. por Qifeng Xu, Xuegong Zhang

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Using DenseFly algorithm for cell searching on massive scRNA-seq datasets por Yixin Chen, Sijie Chen, Xuegong Zhang

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Super-enhancers are transcriptionally more active and cell type-specific than stretch enhancers por Aziz Khan, Anthony Mathelier, Xuegong Zhang

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Protocol for using GRPath to identify putative gene regulation paths in complex human diseases por Xi Xi, Haochen Li, Lei Wei, Xuegong Zhang

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Putative zinc finger protein binding sites are over-represented in the boundaries of methylation-resistant CpG islands in the human genome. por Shicai Fan, Fang Fang, Xuegong Zhang, Michael Q Zhang

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DeepCAGE: Incorporating Transcription Factors in Genome-wide Prediction of Chromatin Accessibility por Qiao Liu, Kui Hua, Xuegong Zhang, Wing Hung Wong, Rui Jiang

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DualGCN: a dual graph convolutional network model to predict cancer drug response por Tianxing Ma, Qiao Liu, Haochen Li, Mu Zhou, Rui Jiang, Xuegong Zhang

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Cellular features of localized microenvironments in human meniscal degeneration: a single-cell transcriptomic study por Weili Fu, Sijie Chen, Runze Yang, Chen Li, Haoxiang Gao, Jian Li, Xuegong Zhang

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Dynamic atlas of immune cells reveals multiple functional features of macrophages associated with progression of pulmonary fibrosis por Jiaoyan Lv, Haoxiang Gao, Jie Ma, Jiachen Liu, Yujie Tian, Chunyuan Yang, Mansheng Li, Yue Zhao, Zhimin Li, Xuegong Zhang, Xuegong Zhang, Yunping Zhu, Jianhong Zhang, Jianhong Zhang, Li Wu, Li Wu

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Prediction and analysis of metagenomic operons via MetaRon: a pipeline for prediction of Metagenome and whole-genome opeRons por Syed Shujaat Ali Zaidi, Masood Ur Rehman Kayani, Xuegong Zhang, Younan Ouyang, Imran Haider Shamsi

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An Experiment on Ab Initio Discovery of Biological Knowledge from scRNA-Seq Data Using Machine Learning por Najeebullah Shah, Jiaqi Li, Fanhong Li, Wenchang Chen, Haoxiang Gao, Sijie Chen, Kui Hua, Xuegong Zhang

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Protocol for profiling cell-centric assembled single-cell human transcriptome data in hECA por Yixin Chen, Minsheng Hao, Haoxiang Gao, Jiaqi Li, Sijie Chen, Fanhong Li, Lei Wei, Xuegong Zhang

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Building a learnable universal coordinate system for single-cell atlas with a joint-VAE model por Haoxiang Gao, Kui Hua, Xinze Wu, Lei Wei, Sijie Chen, Qijin Yin, Rui Jiang, Xuegong Zhang

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Detecting DNA modifications from SMRT sequencing data by modeling sequence context dependence of polymerase kinetic. por Zhixing Feng, Gang Fang, Jonas Korlach, Tyson Clark, Khai Luong, Xuegong Zhang, Wing Wong, Eric Schadt

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A mechanism-informed deep neural network enables prioritization of regulators that drive cell state transitions por Xi Xi, Jiaqi Li, Jinmeng Jia, Qiuchen Meng, Chen Li, Xiaowo Wang, Lei Wei, Xuegong Zhang

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Whole-Exome Sequencing of Discordant Monozygotic Twin Families for Identification of Candidate Genes for Microtia-Atresia por Xinmiao Fan, Lu Ping, Hao Sun, Yushan Chen, Pu Wang, Tao Liu, Rui Jiang, Xuegong Zhang, Xiaowei Chen

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Evaluation of the ABC pathway in patients with atrial fibrillation: A machine learning cluster analysis por Jingyang Wang, Haiyang Bian, Jiangshan Tan, Jun Zhu, Lulu Wang, Wei Xu, Lei Wei, Xuegong Zhang, Yanmin Yang

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Tongue coating microbiome as a potential biomarker for gastritis including precancerous cascade por Jiaxing Cui, Hongfei Cui, Mingran Yang, Shiyu Du, Junfeng Li, Yingxue Li, Liyang Liu, Xuegong Zhang, Shao Li

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