Strand-specific RNA sequencing reveals extensive regulated long antisense transcripts that are conserved across yeast species by Yassour, Moran, Pfiffner, Jenna, Levin, Joshua Z., Adiconis, Xian, Gnirke, Andreas, Nusbaum, Chad, Thompson, Dawn-Anne, Friedman, Nir, Regev, Aviv, Yassour, Moran

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High-Resolution View of the Yeast Meiotic Program Revealed by Ribosome Profiling by Regev, Aviv, Brar, Gloria A., Yassour, Moran, Friedman, Nir, Ingolia, Nicholas T., Weissman, Jonathan S.

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Comprehensive comparative analysis of strand-specific RNA sequencing methods by Regev, Aviv, Levin, Joshua Z., Yassour, Moran, Adiconis, Xian, Nusbaum, Chad, Thompson, Dawn Anne, Friedman, Nir, Gnirke, Andreas

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Development and evaluation of RNA-seq methods by Levin, Joshua Z., Adiconis, Xian, Yassour, Moran, Thompson, Dawn, Guttman, Mitchell, Berger, Michael F., Fan, Lin, Friedman, Nir, Nusbaum, Chad, Gnirke, Andreas, Regev, Aviv

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The evolution, evolvability and engineering of gene regulatory DNA by Vaishnav, Eeshit Dhaval, de Boer, Carl G, Molinet, Jennifer, Yassour, Moran, Fan, Lin, Adiconis, Xian, Thompson, Dawn A, Levin, Joshua Z, Cubillos, Francisco A, Regev, Aviv

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Natural history of the infant gut microbiome and impact of antibiotic treatment on bacterial strain diversity and stability by Yassour, Moran, Vatanen, Tommi, Siljander, Heli, Hämäläinen, Anu-Maaria, Härkönen, Taina, Ryhänen, Samppa J., Franzosa, Eric A., Vlamakis, Hera, Huttenhower, Curtis, Gevers, Dirk, Knip, Mikael, Lander, Eric Steven, Xavier, Ramnik Joseph

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Delivery Mode Affects Stability of Early Infant Gut Microbiota by Mitchell, Caroline M, Mazzoni, Chiara, Hogstrom, Larson, Bryant, Allison, Bergerat, Agnes, Cher, Avital, Pochan, Shawna, Herman, Penelope, Carrigan, Maureen, Sharp, Karen, Huttenhower, Curtis, Lander, Eric S, Vlamakis, Hera, Xavier, Ramnik J, Yassour, Moran

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Sub-clinical detection of gut microbial biomarkers of obesity and type 2 diabetes by Yassour, Moran, Lim, Mi Young, Yun, Hyun Sun, Tickle, Timothy L., Sung, Joohon, Song, Yun-Mi, Lee, Kayoung, Franzosa, Eric A., Morgan, Xochitl C., Gevers, Dirk, Xavier, Ramnik J., Birren, Bruce W., Ko, GwangPyo, Huttenhower, Curtis, Lander, Eric Steven

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Strain-Level Analysis of Mother-to-Child Bacterial Transmission during the First Few Months of Life by Yassour, Moran, Jason, Eeva, Hogstrom, Larson J., Arthur, Timothy D., Tripathi, Surya, Siljander, Heli, Selvenius, Jenni, Oikarinen, Sami, Hyöty, Heikki, Virtanen, Suvi M., Ilonen, Jorma, Ferretti, Pamela, Pasolli, Edoardo, Tett, Adrian, Asnicar, Francesco, Segata, Nicola, Vlamakis, Hera, Lander, Eric Steven, Huttenhower, Curtis, Knip, Mikael, Xavier, Ramnik J.

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A novel Ruminococcus gnavus clade enriched in inflammatory bowel disease patients by Hall, Andrew Brantley, Yassour, Moran, Sauk, Jenny, Garner, Ashley, Jiang, Xiaofang, Arthur, Timothy, Vatanen, Tommi, Fornelos, Nadine, Wilson, Robin, Bertha, Madeline, Cohen, Melissa, Garber, John, Khalili, Hamed, Gevers, Dirk, Ananthakrishnan, Ashwin N., Kugathasan, Subra, Lander, Eric S., Vlamakis, Hera, Xavier, Ramnik J., Huttenhower, Curtis, Lagoudas, Georgia K, Blainey, Paul C

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De novo transcript sequence reconstruction from RNA-Seq: reference generation and analysis with Trinity by Haas, Brian J., Papanicolaou, Alexie, Yassour, Moran, Grabherr, Manfred G., Blood, Philip D., Bowden, Joshua, Couger, Matthew Brian, Eccles, David, Li, Bo, Lieber, Matthias, MacManes, Matthew D., Ott, Michael, Orvis, Joshua, Pochet, Nathalie, Strozzi, Francesco, Weeks, Nathan, Westerman, Rick, William, Thomas, Dewey, Colin N., Henschel, Robert, LeDuc, Richard D., Friedman, Nir, Regev, Aviv

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