Scalable methods for storage, processing and analysis of sequencing datasets by Yorukoglu, Deniz

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HapTree-X: An Integrative Bayesian Framework for Haplotype Reconstruction from Transcriptome and Genome Sequencing Data by Berger, Emily R, Yorukoglu, Deniz, Berger Leighton, Bonnie

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Traversing the k-mer Landscape of NGS Read Datasets for Quality Score Sparsification by Berger Leighton, Bonnie, Yu, Yun William, Yorukoglu, Deniz

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HapTree: A Novel Bayesian Framework for Single Individual Polyplotyping Using NGS Data by Berger, Emily, Yorukoglu, Deniz, Peng, Jian, Berger, Bonnie

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Quality score compression improves genotyping accuracy by Yu, Yun William, Yorukoglu, Deniz, Peng, Jian, Berger Leighton, Bonnie

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Fast genotyping of known SNPs through approximate by Shajii, Ariya, Yorukoglu, Deniz, Yu, Yun William, Berger Leighton, Bonnie

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HapTree: A Novel Bayesian Framework for Single Individual Polyplotyping Using NGS Data by Berger, Emily R, Yorukoglu, Deniz, Peng, Jian, Berger Leighton, Bonnie

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Dissect: detection and characterization of novel structural alterations in transcribed sequences by Yorukoglu, Deniz, Hac, Faraz, Swanson, Lucas, Collins, Colin C., Birol, Inanc, Sahinalp, S. Cenk

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Improved haplotype inference by exploiting long-range linking and allelic imbalance in RNA-seq datasets by Berger, Emily, Yorukoglu, Deniz, Zhang, Lillian, Nyquist, Sarah Kate, Shalek, Alexander K, Kellis, Manolis, Numanagic, Ibrahim, Berger Leighton, Bonnie

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Barnacle: detecting and characterizing tandem duplications and fusions in transcriptome assemblies by Swanson, Lucas, Robertson, Gordon, Mungall, Karen L., Butterfield, Yaron S., Chiu, Readman, Corbett, Richard D., Docking, T. R., Hogge, Donna, Jackman, Shaun D., Moore, Richard A., Mungall, Andrew J., Nip, Ka Ming, Parker, Jeremy D. K., Qian, Jenny Q., Raymond, Anthony, Sung, Sandy, Tam, Angela, Thiessen, Nina, Varhol, Richard, Wang, Sherry, Yorukoglu, Deniz, Zhao, YongJun, Hoodless, Pamela A., Sahinalp, S. C., Karsan, Aly, Birol, Inanc, Qian, Jenny, Sahinalp, S.

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