GENESIS CGDYN: large-scale coarse-grained MD simulation with dynamic load balancing for heterogeneous biomolecular systems by Jaewoon Jung, Cheng Tan, Yuji Sugita

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Micelle-like clusters in phase-separated Nanog condensates: A molecular simulation study. by Azuki Mizutani, Cheng Tan, Yuji Sugita, Shoji Takada

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Molecular dynamics simulations reveal proton transfer pathways in cytochrome C-dependent nitric oxide reductase. by Andrei V Pisliakov, Tomoya Hino, Yoshitsugu Shiro, Yuji Sugita

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Modified Protein-Water Interactions in CHARMM36m for Thermodynamics and Kinetics of Proteins in Dilute and Crowded Solutions by Daiki Matsubara, Kento Kasahara, Hisham M. Dokainish, Hiraku Oshima, Yuji Sugita

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Development of hidden Markov modeling method for molecular orientations and structure estimation from high-speed atomic force microscopy time-series images. by Tomonori Ogane, Daisuke Noshiro, Toshio Ando, Atsuko Yamashita, Yuji Sugita, Yasuhiro Matsunaga

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The inherent flexibility of receptor binding domains in SARS-CoV-2 spike protein by Hisham M Dokainish, Suyong Re, Takaharu Mori, Chigusa Kobayashi, Jaewoon Jung, Yuji Sugita

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Pseudo-Luciferase Activity of the SARS-CoV‑2 Spike Protein for Cypridina Luciferin by Ryo Nishihara, Hisham M. Dokainish, Yoshiki Kihara, Hiroki Ashiba, Yuji Sugita, Ryoji Kurita

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