Zhiping Weng

Zhiping Weng is the Li Weibo Professor of Biomedical Research and founding Chair of Department of Genomics and Computational Biology at the University of Massachusetts Medical School. Prior to that, she was the Director of the Program in Integrative Biology and Bioinformatics at the University of Massachusetts Medical School. She was awarded Fellowship of the International Society for Computational Biology (ISCB) in 2020 for outstanding contributions to computational biology and bioinformatics. Provided by Wikipedia
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  1. 1
    Exploring angular distance in protein-protein docking algorithms.

    Exploring angular distance in protein-protein docking algorithms. by Thom Vreven, Howook Hwang, Zhiping Weng

    Published 2013-01-01
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  2. 2
    Accelerating protein docking in ZDOCK using an advanced 3D convolution library.

    Accelerating protein docking in ZDOCK using an advanced 3D convolution library. by Brian G Pierce, Yuichiro Hourai, Zhiping Weng

    Published 2011-01-01
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  3. 3
    Distinct functions for the Drosophila piRNA pathway in genome maintenance and telomere protection.

    Distinct functions for the Drosophila piRNA pathway in genome maintenance and telomere protection. by Jaspreet S Khurana, Jia Xu, Zhiping Weng, William E Theurkauf

    Published 2010-12-01
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  4. 4
    Quantitative analysis of single nucleotide polymorphisms within copy number variation.

    Quantitative analysis of single nucleotide polymorphisms within copy number variation. by Soohyun Lee, Simon Kasif, Zhiping Weng, Charles R Cantor

    Published 2008-01-01
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  5. 5
    The insulator binding protein CTCF positions 20 nucleosomes around its binding sites across the human genome.

    The insulator binding protein CTCF positions 20 nucleosomes around its binding sites across the human genome. by Yutao Fu, Manisha Sinha, Craig L Peterson, Zhiping Weng

    Published 2008-07-01
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  6. 6
    Predicting human splicing branchpoints by combining sequence-derived features and multi-label learning methods

    Predicting human splicing branchpoints by combining sequence-derived features and multi-label learning methods by Wen Zhang, Xiaopeng Zhu, Yu Fu, Junko Tsuji, Zhiping Weng

    Published 2017-12-01
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  7. 7
    MafB, WDR77, and ß-catenin interact with each other and have similar genome association profiles.

    MafB, WDR77, and ß-catenin interact with each other and have similar genome association profiles. by Lizhi He, Mingshi Gao, Henry Pratt, Zhiping Weng, Kevin Struhl

    Published 2022-01-01
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  8. 8
    Coordinated cell type-specific epigenetic remodeling in prefrontal cortex begins before birth and continues into early adulthood.

    Coordinated cell type-specific epigenetic remodeling in prefrontal cortex begins before birth and continues into early adulthood. by Hennady P Shulha, Iris Cheung, Yin Guo, Schahram Akbarian, Zhiping Weng

    Published 2013-04-01
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  9. 9
    The temporal landscape of recursive splicing during Pol II transcription elongation in human cells.

    The temporal landscape of recursive splicing during Pol II transcription elongation in human cells. by Xiao-Ou Zhang, Yu Fu, Haiwei Mou, Wen Xue, Zhiping Weng

    Published 2018-08-01
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  10. 10
    A curated benchmark of enhancer-gene interactions for evaluating enhancer-target gene prediction methods

    A curated benchmark of enhancer-gene interactions for evaluating enhancer-target gene prediction methods by Jill E. Moore, Henry E. Pratt, Michael J. Purcaro, Zhiping Weng

    Published 2020-01-01
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  11. 11
    YAP and TAZ are transcriptional co-activators of AP-1 proteins and STAT3 during breast cellular transformation

    YAP and TAZ are transcriptional co-activators of AP-1 proteins and STAT3 during breast cellular transformation by Lizhi He, Henry Pratt, Mingshi Gao, Fengxiang Wei, Zhiping Weng, Kevin Struhl

    Published 2021-08-01
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  12. 12
    Elimination of PCR duplicates in RNA-seq and small RNA-seq using unique molecular identifiers

    Elimination of PCR duplicates in RNA-seq and small RNA-seq using unique molecular identifiers by Yu Fu, Pei-Hsuan Wu, Timothy Beane, Phillip D. Zamore, Zhiping Weng

    Published 2018-07-01
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  13. 13
    Flnc: Machine Learning Improves the Identification of Novel Long Noncoding RNAs from Stand-Alone RNA-Seq Data

    Flnc: Machine Learning Improves the Identification of Novel Long Noncoding RNAs from Stand-Alone RNA-Seq Data by Zixiu Li, Peng Zhou, Euijin Kwon, Katherine A. Fitzgerald, Zhiping Weng, Chan Zhou

    Published 2022-10-01
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  14. 14
    A systems level approach to temporal expression dynamics in Drosophila reveals clusters of long term memory genes.

    A systems level approach to temporal expression dynamics in Drosophila reveals clusters of long term memory genes. by Julianna Bozler, Balint Z Kacsoh, Hao Chen, William E Theurkauf, Zhiping Weng, Giovanni Bosco

    Published 2017-10-01
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  15. 15
    A system for genome-wide histone variant dynamics in ES cells reveals dynamic MacroH2A2 replacement at promoters.

    A system for genome-wide histone variant dynamics in ES cells reveals dynamic MacroH2A2 replacement at promoters. by Ozlem Yildirim, Jui-Hung Hung, Ryan J Cedeno, Zhiping Weng, Christopher J Lengner, Oliver J Rando

    Published 2014-08-01
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  16. 16
    Co-dependent Assembly of Drosophila piRNA Precursor Complexes and piRNA Cluster Heterochromatin

    Co-dependent Assembly of Drosophila piRNA Precursor Complexes and piRNA Cluster Heterochromatin by Gen Zhang, Shikui Tu, Tianxiong Yu, Xiao-Ou Zhang, Swapnil S. Parhad, Zhiping Weng, William E. Theurkauf

    Published 2018-09-01
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  17. 17
    The Role of H3K4me3 in Transcriptional Regulation Is Altered in Huntington's Disease.

    The Role of H3K4me3 in Transcriptional Regulation Is Altered in Huntington's Disease. by Xianjun Dong, Junko Tsuji, Adam Labadorf, Panos Roussos, Jiang-Fan Chen, Richard H Myers, Schahram Akbarian, Zhiping Weng

    Published 2015-01-01
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  18. 18
    Inhibiting cycloxygenase and ornithine decarboxylase by diclofenac and alpha-difluoromethylornithine blocks cutaneous SCCs by targeting Akt-ERK axis.

    Inhibiting cycloxygenase and ornithine decarboxylase by diclofenac and alpha-difluoromethylornithine blocks cutaneous SCCs by targeting Akt-ERK axis. by Aadithya Arumugam, Zhiping Weng, Sarang S Talwelkar, Sandeep C Chaudhary, Levy Kopelovich, Craig A Elmets, Farrukh Afaq, Mohammad Athar

    Published 2013-01-01
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  19. 19
    The genome of the Hi5 germ cell line from Trichoplusia ni, an agricultural pest and novel model for small RNA biology

    The genome of the Hi5 germ cell line from Trichoplusia ni, an agricultural pest and novel model for small RNA biology by Yu Fu, Yujing Yang, Han Zhang, Gwen Farley, Junling Wang, Kaycee A Quarles, Zhiping Weng, Phillip D Zamore

    Published 2018-01-01
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  20. 20
    GLH/VASA helicases promote germ granule formation to ensure the fidelity of piRNA-mediated transcriptome surveillance

    GLH/VASA helicases promote germ granule formation to ensure the fidelity of piRNA-mediated transcriptome surveillance by Wenjun Chen, Jordan S. Brown, Tao He, Wei-Sheng Wu, Shikui Tu, Zhiping Weng, Donglei Zhang, Heng-Chi Lee

    Published 2022-09-01
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