CB2 improves power of cell detection in droplet-based single-cell RNA sequencing data by Zijian Ni, Shuyang Chen, Jared Brown, Christina Kendziorski

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SpotClean adjusts for spot swapping in spatial transcriptomics data by Zijian Ni, Aman Prasad, Shuyang Chen, Richard B. Halberg, Lisa M. Arkin, Beth A. Drolet, Michael A. Newton, Christina Kendziorski

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An In Vitro Human Segmentation Clock Model Derived from Embryonic Stem Cells by Li-Fang Chu, Daniel Mamott, Zijian Ni, Rhonda Bacher, Cathy Liu, Scott Swanson, Christina Kendziorski, Ron Stewart, James A. Thomson

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Network analyses: Inhibition of androgen receptor signaling reduces inflammation in the lung through AR-MAF-IL6 signaling axes by Albert R. Wang, Andrew M. Baschnagel, Zijian Ni, Sean R. Brennan, Hypatia K. Newton, Darya Buehler, Christina Kendziorski, Randall J. Kimple, Gopal Iyer

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Serial KinderMiner (SKiM) discovers and annotates biomedical knowledge using co-occurrence and transformer models by Robert J. Millikin, Kalpana Raja, John Steill, Cannon Lock, Xuancheng Tu, Ian Ross, Lam C. Tsoi, Finn Kuusisto, Zijian Ni, Miron Livny, Brian Bockelman, James Thomson, Ron Stewart

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Genomic analysis of human brain metastases treated with stereotactic radiosurgery reveals unique signature based on treatment failure by Jack M. Shireman, Quinn White, Zijian Ni, Chitrasen Mohanty, Yujia Cai, Lei Zhao, Namita Agrawal, Nikita Gonugunta, Xiaohu Wang, Liam Mccarthy, Varshitha Kasulabada, Akshita Pattnaik, Atique U. Ahmed, James Miller, Charles Kulwin, Aaron Cohen-Gadol, Troy Payner, Chih-Ta Lin, Jesse J. Savage, Brandon Lane, Kevin Shiue, Aaron Kamer, Mitesh Shah, Gopal Iyer, Gordon Watson, Christina Kendziorski, Mahua Dey

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