Genome-wide association studies of global Mycobacterium tuberculosis resistance to 13 antimicrobials in 10,228 genomes identify new resistance mechanisms. by The CRyPTIC Consortium

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A data compendium associating the genomes of 12,289 Mycobacterium tuberculosis isolates with quantitative resistance phenotypes to 13 antibiotics. by The CRyPTIC Consortium

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Quantitative measurement of antibiotic resistance in Mycobacterium tuberculosis reveals genetic determinants of resistance and susceptibility in a target gene approach by The CRyPTIC Consortium

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Quantitative drug susceptibility testing for Mycobacterium tuberculosis using unassembled sequencing data and machine learning by The CRyPTIC consortium

Multi-label random forest model for tuberculosis drug resistance classification and mutation ranking by Kouchaki, S, Yang, Y, Lapachelle, A, Walker, T, Walker, AS, CRyPTIC Consortium, Peto, T, Crook, D, Clifton, DA

Minos: variant adjudication and joint genotyping of cohorts of bacterial genomes by Martin Hunt, Brice Letcher, Kerri M. Malone, Giang Nguyen, Michael B. Hall, Rachel M. Colquhoun, Leandro Lima, Michael C. Schatz, Srividya Ramakrishnan, CRyPTIC consortium, Zamin Iqbal

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High fluoroquinolone resistance proportions among multidrug-resistant tuberculosis driven by dominant L2 Mycobacterium tuberculosis clones in the Mumbai Metropolitan Region by Dreyer, V, Mandal, A, Dev, P, Merker, M, Barilar, I, Utpatel, C, Nilgiriwala, K, Rodrigues, C, Crook, DW, CRyPTIC Consortium, Rasigade, J-P, Wirth, T, Mistry, N, Niemann, S

High fluoroquinolone resistance proportions among multidrug-resistant tuberculosis driven by dominant L2 Mycobacterium tuberculosis clones in the Mumbai Metropolitan Region by Viola Dreyer, Ayan Mandal, Prachi Dev, Matthias Merker, Ivan Barilar, Christian Utpatel, Kayzad Nilgiriwala, Camilla Rodrigues, Derrick W. Crook, the CRyPTIC Consortium, Jean-Philippe Rasigade, Thierry Wirth, Nerges Mistry, Stefan Niemann

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Prediction of susceptibility to first-line tuberculosis drugs by DNA sequencing by Allix-Béguec, C, Arandjelovic, I, Bi, L, Clifton, D, Crook, D, Fowler, P, Gibertoni Cruz, A, Golubchik, T, Hoosdally, S, Hunt, M, Iqbal, Z, Lipworth, S, Peto, T, Thwaites, G, Walker, A, Walker, T, Wilson, D, Wyllie, D, Yang, Y, The CRyPTIC Consortium et al.

A crowd of BashTheBug volunteers reproducibly and accurately measure the minimum inhibitory concentrations of 13 antitubercular drugs from photographs of 96-well broth microdilutio... by Philip W Fowler, Carla Wright, Helen Spiers, Tingting Zhu, Elisabeth ML Baeten, Sarah W Hoosdally, Ana L Gibertoni Cruz, Aysha Roohi, Samaneh Kouchaki, Timothy M Walker, Timothy EA Peto, Grant Miller, Chris Lintott, David Clifton, Derrick W Crook, A Sarah Walker, The Zooniverse Volunteer Community, The CRyPTIC Consortium

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Multi-Label Random Forest Model for Tuberculosis Drug Resistance Classification and Mutation Ranking by Samaneh Kouchaki, Yang Yang, Yang Yang, Alexander Lachapelle, Timothy M. Walker, Timothy M. Walker, Timothy M. Walker, A. Sarah Walker, A. Sarah Walker, A. Sarah Walker, CRyPTIC Consortium, Timothy E. A. Peto, Timothy E. A. Peto, Timothy E. A. Peto, Derrick W. Crook, Derrick W. Crook, Derrick W. Crook, David A. Clifton

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GenomegaMap: Within-species genome-wide dN/dS estimation from over 10,000 genomes by Wilson, DJ, Crook, DW, Peto, TEA, Walker, AS, Hoosdally, S, Gibertoni Cruz, AL, Carter, J, Grazian, C, Earle, SG, Kouchaki, S, Lachapelle, A, Yang, Y, Clifton, DA, Fowler, PW

Other Authors: “…CRyPTIC Consortium…”

Reply: Epidemiological cut-off values for a 96-well broth microdilution plate for high-throughput research antibiotic susceptibility testing of M. tuberculosis

Other Authors: “…The CRyPTIC Consortium…”

Genome-wide association studies of global Mycobacterium tuberculosis resistance to 13 antimicrobials in 10,228 genomes identify new resistance mechanisms by Earle, SG, Wilson, DJ, Barilar, I, Battaglia, S, Cirillo, DM, Clifton, DA, Crook, DW, Fowler, PW, Grazian, C, Hunt, M, Iqbal, Z, Ismail, NA, Knaggs, J, Lachapelle, AS, Merker, M, Mistry, N, Moore, D, Niemann, S, Peto, TEA, Rodrigues, C, Thwaites, G, Walker, AS

Other Authors: “…CRyPTIC Consortium…”

Cryo-EM structure and resistance landscape of M. tuberculosis MmpL3: an emergent therapeutic target by Adams, O, Deme, JC, Parker, JL, Fowler, PW, Lea, SM, Newstead, S

Other Authors: “…CRyPTIC Consortium…”

A data compendium associating the genomes of 12,289 Mycobacterium tuberculosis isolates with quantitative resistance phenotypes to 13 antibiotics by Crook, DW, Peto, T, Hoosdally, S, Gibertoni Cruz, A, Walker, S, Walker, T, Fowler, PW, Iqbal, Z, Cirillo, DM, Brankin, A, Malone, K, Hunt, M, Knaggs, J, Mistry, N, Rodrigues, C, Moore, D, Ismail, N, Niemann, S, Roohi, A, Letcher, B, Rancoita, P, Borroni, E, Grazian, C

Other Authors: “…The CRyPTIC Consortium…”