An update to the HIV-TRePS system: the development and evaluation of new global and local computational models to predict HIV treatment outcomes, with or without a genotype by Revell, A, Wang, D, Wood, R, Morrow, C, Tempelman, H, Hamers, R, Reiss, P, van Sighem, A, Nelson, M, Montaner, J, Lane, H, Larder, B

Computational models as predictors of HIV treatment outcomes for the Phidisa cohort in South Africa by Revell, A, Khabo, P, Ledwaba, L, Emery, S, Wang, D, Wood, R, Morrow, C, Tempelman, H, Hamers, RL, Reiss, P, Van Sighem, A, Pozniak, A, Montaner, J, Lane, HC, Larder, B

2018 update to the HIV-TRePS system: the development of new computational models to predict HIV treatment outcomes, with or without a genotype, with enhanced usability for low-inco... by Revell, A, Wang, D, Perez-Elias, M, Wood, R, Cogill, D, Tempelman, H, Hamers, R, Reiss, P, Van Sighem, A, Rehm, C, Pozniak, A, Montaner, J, Lane, H, Larder, B, RDI Data and Study Group

From clinical sample to complete genome: Comparing methods for the extraction of HIV-1 RNA for high-throughput deep sequencing by Cornelissen, M, Gall, A, Vink, M, Zorgdrager, F, Binter, Š, Edwards, S, Jurriaans, S, Bakker, M, Ong, S, Gras, L, van Sighem, A, Bezemer, D, de Wolf, F, Reiss, P, Kellam, P, Berkhout, B, Fraser, C, van der Kuyl, A, BEEHIVE Consortium

Viral genetic variation accounts for a third of variability in HIV-1 set-point viral load in Europe by Blanquart, F, Wymant, C, Cornelissen, M, Gall, A, Bakker, M, Bezemer, D, Hall, M, Hillebregt, M, Ong, S, Albert, J, Bannert, N, Fellay, J, Fransen, K, Gourlay, A, Grabowski, M, Gunsenheimer-Bartmeyer, B, Günthard, H, Kivelä, P, Kouyos, R, Laeyendecker, O, Liitsola, K, Meyer, L, Porter, K, Ristola, M, van Sighem, A, Vanham, G, Berkhout, B, Kellam, P, Reiss, P, Fraser, C, BEEHIVE collaboration

Easy and accurate reconstruction of whole HIV genomes from short-read sequence data with shiver by Wymant, C, Blanquart, F, Golubchik, T, Gall, A, Bakker, M, Bezemer, D, Croucher, N, Hall, M, Hillebregt, M, Ong, S, Ratmann, O, Albert, J, Bannert, N, Fellay, J, Fransen, K, Gourlay, A, Grabowski, M, Gunsenheimer-Bartmeyer, B, Günthard, H, Kivelä, P, Kouyos, R, Laeyendecker, O, Liitsola, K, Meyer, L, Porter, K, Ristola, M, van Sighem, A, Berkhout, B, Cornelissen, M, Kellam, P, Reiss, P, Fraser, C