Defining the estimated core genome of bacterial populations using a Bayesian decision model by Van Tonder, A, Mistry, S, Bray, J, Hill, D, Cody, A, Farmer, C, Klugman, K, Von Gottberg, A, Bentley, S, Parkhill, J, Jolley, K, Maiden, M, Brueggemann, A

Molecular characterization of invasive capsule null Neisseria meningitidis in South Africa by Ganesh, K, Allam, M, Wolter, N, Bratcher, H, Harrison, O, Lucidarme, J, Borrow, R, de Gouveia, L, Meiring, S, Birkhead, M, Maiden, M, von Gottberg, A, du Plessis, M

Pneumococcal capsular switching: a historical perspective. by Wyres, K, Lambertsen, L, Croucher, N, McGee, L, von Gottberg, A, Liñares, J, Jacobs, MR, Kristinsson, K, Beall, B, Klugman, K, Parkhill, J, Hakenbeck, R, Bentley, S, Brueggemann, A

The multidrug-resistant PMEN1 pneumococcus is a paradigm for genetic success. by Wyres, K, Lambertsen, L, Croucher, N, McGee, L, von Gottberg, A, Liñares, J, Jacobs, MR, Kristinsson, K, Beall, B, Klugman, K, Parkhill, J, Hakenbeck, R, Bentley, S, Brueggemann, A

Genomic Diversity and Antimicrobial Susceptibility of Invasive Neisseria meningitidis in South Africa, 2016–2021 by Mikhari, RL, Meiring, S, de Gouveia, L, Chan, WY, Jolley, KA, Van Tyne, D, Harrison, LH, Marjuki, H, Ismail, A, Quan, V, Cohen, C, Walaza, S, von Gottberg, A, du Plessis, M

Putative novel cps loci in a large global collection of pneumococci by Van Tonder, A, Gladstone, R, Lo, S, Nahm, M, Du Plessis, M, Cornick, J, Kwambana-Adams, B, Madhi, S, Hawkins, P, Benisty, R, Dagan, R, Everett, D, Antonio, M, Klugman, K, Von Gottberg, A, Breiman, R, McGee, L, Bentley, S, Turner, P

Rapid pneumococcal evolution in response to clinical interventions. by Croucher, N, Harris, SR, Fraser, C, Quail, M, Burton, J, van der Linden, M, McGee, L, von Gottberg, A, Song, J, Ko, K, Pichon, B, Baker, S, Parry, C, Lambertsen, L, Shahinas, D, Pillai, DR, Mitchell, T, Dougan, G, Tomasz, A, Klugman, K, Parkhill, J, Hanage, W, Bentley, S

The relative invasive disease potential of Streptococcus pneumoniae among children after PCV introduction: A systematic review and meta-analysis by Balsells, E, Dagan, R, Yildirim, I, Gounder, P, Steens, A, Muñoz-Almagro, C, Mameli, C, Kandasamy, R, Lavi, N, Daprai, L, van der Ende, A, Trzciński, K, Nzenze, S, Meiring, S, Foster, D, Bulkow, L, Rudolph, L, Valero-Rello, A, Ducker, S, Vestrheim, D, von Gottberg, A, Pelton, S, Zuccotti, G, Pollard, A, Sanders, E, Campbell, H, Madhi, S, Nair, H, Kyaw, M

International genomic definition of pneumococcal lineages, to contextualise disease, antibiotic resistance and vaccine impact by Gladstone, RA, Lo, SW, Lees, JA, Croucher, NJ, Van Tonder, AJ, Corander, J, Page, AJ, Marttinen, P, Bentley, LJ, Ochoa, TJ, Ho, PL, Du Plessis, M, Cornick, JE, Kwambana-Adams, B, Benisty, R, Nzenze, SA, Madhi, SA, Hawkins, PA, Everett, DB, Antonio, M, Dagan, R, Klugman, KP, Von Gottberg, A, McGee, L, Breiman, RF, Bentley, SD, Turner, P

Global emergence and population dynamics of divergent serotype 3 CC180 pneumococci by Azarian, T, Mitchell, P, Georgieva, M, Thompson, C, Ghouila, A, Pollard, A, Von Gottberg, A, Du Plessis, M, Antonio, M, Kwambana-Adams, B, Clarke, S, Everett, D, Cornick, J, Sadowy, E, Hryniewicz, W, Skoczynska, A, Moïsi, J, McGee, L, Beall, B, Metcalf, B, Breiman, R, Ho, P, Reid, R, O'Brien, K, Gladstone, R, Bentley, S, Hanage, W

Sixteen novel lineages of SARS-CoV-2 in South Africa by Tegally, H, Wilkinson, E, Lessells, RJ, Giandhari, J, Pillay, S, Msomi, N, Mlisana, K, Bhiman, JN, von Gottberg, A, Walaza, S, Fonseca, V, Allam, M, Ismail, A, Glass, AJ, Engelbrecht, S, Van Zyl, G, Preiser, W, Williamson, C, Petruccione, F, Sigal, A, Gazy, I, Hardie, D, Hsiao, N-Y, Martin, D, York, D, Goedhals, D, San, EJ, Giovanetti, M, Lourenço, JM, Alcantara, LCJ, de Oliveira, T

Understanding pneumococcal serotype 1 biology through population genomic analysis by Chaguza, C, Cornick, J, Harris, S, Andam, C, Bricio-Moreno, L, Yang, M, Yalcin, F, Ousmane, S, Govindpersad, S, Senghore, M, Ebruke, C, Du Plessis, M, Kiran, A, Pluschke, G, Sigauque, B, McGee, L, Klugman, K, Turner, P, Corander, J, Parkhill, J, Collard, J, Antonio, M, von Gottberg, A, Heyderman, R, French, N, Kadioglu, A, Hanage, W, Everett, D, Bentley, S, PAGe Consortium

A mosaic tetracycline resistance gene tet(S/M) detected in an MDR pneumococcal CC230 lineage that underwent capsular switching in South Africa by Lo, SW, Gladstone, RA, van Tonder, AJ, Du Plessis, M, Cornick, JE, Hawkins, PA, Madhi, SA, Nzenze, SA, Kandasamy, R, Ravikumar, KL, Elmdaghri, N, Kwambana-Adams, B, Almeida, SCG, Skoczynska, A, Egorova, E, Titov, L, Saha, SK, Paragi, M, Everett, DB, Antonio, M, Klugman, KP, Li, Y, Metcalf, BJ, Beall, B, McGee, L, Breiman, RF, Bentley, SD, von Gottberg, A, Global Pneumococcal Sequencing Consortium

Emergence of a multidrug-resistant and virulent Streptococcus pneumoniae lineage mediates serotype replacement after PCV13: an international whole-genome sequencing study by Lo, SW, Mellor, K, Cohen, R, Alonso, AR, Belman, S, Kumar, N, Hawkins, PA, Gladstone, RA, von Gottberg, A, Veeraraghavan, B, Ravikumar, KL, Kandasamy, R, Pollard, AJ, Saha, SK, Bigogo, G, Antonio, M, Kwambana-Adams, B, Mirza, S, Shakoor, S, Nisar, I, Cornick, JE, Lehmann, D, Ford, RL, Sigauque, B, Turner, P, Moïsi, J, Obaro, SK, Dagan, R, Diawara, I, Skoczyńska, A, Wang, H, Carter, PE, Klugman, KP, Rodgers, G, Breiman, RF, McGee, L, Bentley, SD, Muñoz-Almagro, C, Varon, E

A Streptococcus pneumoniae lineage usually associated with pneumococcal conjugate vaccine (PCV) serotypes is the most common cause of serotype 35B invasive disease in South Africa,... by Ndlangisa, KM, du Plessis, M, Lo, S, de Gouveia, L, Chaguza, C, Antonio, M, Kwambana-Adams, B, Cornick, J, Everett, DB, Dagan, R, Hawkins, PA, Beall, B, Corso, A, Grassi Almeida, SC, Ochoa, TJ, Obaro, S, Shakoor, S, Donkor, ES, Gladstone, RA, Ho, PL, Paragi, M, Doiphode, S, Srifuengfung, S, Ford, R, Moïsi, J, Saha, SK, Bigogo, G, Sigauque, B, Eser, ÖK, Elmdaghri, N, Titov, L, Turner, P, Kumar, KLR, Kandasamy, R, Egorova, E, Ip, M, Breiman, RF, Klugman, KP, McGee, L, Bentley, SD, von Gottberg, A

Mycobacterium tuberculosis bloodstream infection prevalence, diagnosis, and mortality risk in seriously ill adults with HIV: a systematic review and meta-analysis of individual pat... by Barr, DA, Lewis, JM, Feasey, N, Schutz, C, Kerkhoff, AD, Jacob, ST, Andrews, B, Kelly, P, Lakhi, S, Muchemwa, L, Bacha, HA, Hadad, DJ, Bedell, R, van Lettow, M, Zachariah, R, Crump, JA, Alland, D, Corbett, EL, Gopinath, K, Singh, S, Griesel, R, Maartens, G, Mendelson, M, Ward, AM, Parry, CM, Talbot, EA, Munseri, P, Dorman, SE, Martinson, N, Shah, M, Cain, K, Heilig, CM, Varma, JK, von Gottberg, A, Sacks, L, Wilson, D, Squire, SB, Lalloo, DG, Davies, G, Meintjes, G

Detection of a SARS-CoV-2 variant of concern in South Africa by Tegally, H, Wilkinson, E, Giovanetti, M, Iranzadeh, A, Fonseca, V, Giandhari, J, Doolabh, D, Pillay, S, San, EJ, Msomi, N, Mlisana, K, von Gottberg, A, Walaza, S, Allam, M, Ismail, A, Mohale, T, Glass, AJ, Engelbrecht, S, Van Zyl, G, Preiser, W, Petruccione, F, Sigal, A, Hardie, D, Marais, G, Hsiao, N-Y, Korsman, S, Davies, M-A, Tyers, L, Mudau, I, York, D, Maslo, C, Goedhals, D, Abrahams, S, Laguda-Akingba, O, Alisoltani-Dehkordi, A, Godzik, A, Wibmer, CK, Sewell, BT, Lourenço, JM, Alcantara, LCJ, Kosakovsky Pond, SL, Weaver, S, Martin, D, Lessells, RJ, Bhiman, JN, Williamson, C, de Oliveira, T

Joint sequencing of human and pathogen genomes reveals the genetics of pneumococcal meningitis by Lees, J, Ferwerda, B, Kremer, PHC, Wheeler, N, Serón, M, Croucher, N, Gladstone, R, Bootsma, H, Rots, N, Wijmega-Monsuur, A, Sanders, EAM, Trzciński, K, Wyllie, A, Zwinderman, A, Van Den Berg, L, Van Rheenen, W, Veldink, J, Harboe, Z, Lundbo, L, De Groot, LCPGM, Van Schoor, N, Van Der Velde, N, Ängquist, L, Sørensen, TIA, Nohr, E, Mentzer, A, Mills, T, Knight, JC, Du Plessis, M, Nzenze, S, Weiser, J, Parkhill, J, Madhi, S, Benfield, T, Von Gottberg, A, Van Der Ende, A, Brouwer, M, Barrett, J, Bentley, S, Van De Beek, D

Visualizing variation within Global Pneumococcal Sequence Clusters (GPSCs) and country population snapshots to contextualize pneumococcal isolates by Gladstone, RA, Lo, SW, Goater, R, Yeats, C, Taylor, B, Hadfield, J, Lees, JA, Croucher, NJ, van Tonder, AJ, Bentley, LJ, Quah, FX, Blaschke, AJ, Pershing, NL, Byington, CL, Balaji, V, Hryniewicz, W, Sigauque, B, Ravikumar, KL, Almeida, SCG, Ochoa, TJ, Ho, PL, du Plessis, M, Ndlangisa, KM, Cornick, JE, Kwambana-Adams, B, Benisty, R, Nzenze, SA, Madhi, SA, Hawkins, PA, Pollard, AJ, Everett, DB, Antonio, M, Dagan, R, Klugman, KP, von Gottberg, A, Metcalf, BJ, Li, Y, Beall, BW, McGee, L, Breiman, RF, Aanensen, DM, Bentley, SD, The Global Pneumococcal Sequencing Consortium

Global, regional, and national disease burden estimates of acute lower respiratory infections due to respiratory syncytial virus in children younger than 5 years in 2019: a systema... by Li, Y, Wang, X, Blau, DM, Caballero, MT, Feikin, DR, Gill, CJ, Madhi, SA, Omer, SB, Simões, EAF, Campbell, H, Pariente, AB, Bardach, D, Bassat, Q, Casalegno, J-S, Chakhunashvili, G, Crawford, N, Danilenko, D, Do, LAH, Echavarria, M, Gentile, A, Gordon, A, Heikkinen, T, Huang, QS, Jullien, S, Krishnan, A, Lopez, EL, Markić, J, Mira-Iglesias, A, Moore, HC, Moyes, J, Mwananyanda, L, Nokes, DJ, Noordeen, F, Obodai, E, Palani, N, Romero, C, Salimi, V, Satav, A, Seo, E, Shchomak, Z, Singleton, R, Stolyarov, K, Stoszek, SK, von Gottberg, A, Wurzel, D, Yoshida, L-M, Yung, CF, Zar, HJ, Nair, H, Pollard, AJ