Transcriptome profiling of stevia rebaudiana ms007 revealed genes involved in flowedevelopment
Stevia rebaudiana is a medicinal plant recommended to diabetic or obese patients as an alternative sweetener owing to its low-calorie property. Previous studies have found that the stevioside level is highest at the time of flower bud formation and lowest at the time of preceding and following flowe...
| Main Authors: | , , , , , , |
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| Format: | Article |
| Language: | English |
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TUBITAK
2021
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| Online Access: | http://umpir.ump.edu.my/id/eprint/33390/1/Transcriptome%20profiling%20of%20stevia%20rebaudiana%20ms007%20revealed%20genes.pdf |
| _version_ | 1825814199447584768 |
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| author | Nurul Hidayah, Samsulrizal Khairul Shahyidi, Khadzran Meenakshi Sundram, Tamil Chelvan Zarina, Zainuddin Siti Hajar Noor, Shaarani Nur Sabrina, Ahmad Azmi Sarahani, Harun |
| author_facet | Nurul Hidayah, Samsulrizal Khairul Shahyidi, Khadzran Meenakshi Sundram, Tamil Chelvan Zarina, Zainuddin Siti Hajar Noor, Shaarani Nur Sabrina, Ahmad Azmi Sarahani, Harun |
| author_sort | Nurul Hidayah, Samsulrizal |
| collection | UMP |
| description | Stevia rebaudiana is a medicinal plant recommended to diabetic or obese patients as an alternative sweetener owing to its low-calorie property. Previous studies have found that the stevioside level is highest at the time of flower bud formation and lowest at the time of preceding and following flower bud formation. Hence, this study aims to identify the genes involved in the flowering of local S. rebaudiana accession MS007 by investigating the transcriptomic data of two stages of growth, before flowering (BF) and after flowering (AF) that were deposited under accession number SRX6362785 and SRX6362784 at the NCBI SRA database. The transcriptomic study managed to annotate 108299 unigenes of S. rebaudiana with 8871 and 9832 genes that were differentially expressed in BF and AF samples, respectively. These genes involved in various metabolic pathways related to flower development, response to stimulus as well as photosynthesis. Pheophorbide A oxygenase (PAO), eukaryotic translation initiation factor 3 subunit E (TIF3E1), and jasmonate ZIM domain-containing protein 1 (JAZ1) were found to be involved in the flower development. The outcome of this study will help further research in the manipulation of the flowering process, especially in the breeding programme to develop photo-insensitive Stevia plant. |
| first_indexed | 2024-03-06T12:55:17Z |
| format | Article |
| id | UMPir33390 |
| institution | Universiti Malaysia Pahang |
| language | English |
| last_indexed | 2024-03-06T12:55:17Z |
| publishDate | 2021 |
| publisher | TUBITAK |
| record_format | dspace |
| spelling | UMPir333902022-09-08T04:49:18Z http://umpir.ump.edu.my/id/eprint/33390/ Transcriptome profiling of stevia rebaudiana ms007 revealed genes involved in flowedevelopment Nurul Hidayah, Samsulrizal Khairul Shahyidi, Khadzran Meenakshi Sundram, Tamil Chelvan Zarina, Zainuddin Siti Hajar Noor, Shaarani Nur Sabrina, Ahmad Azmi Sarahani, Harun QK Botany T Technology (General) TP Chemical technology Stevia rebaudiana is a medicinal plant recommended to diabetic or obese patients as an alternative sweetener owing to its low-calorie property. Previous studies have found that the stevioside level is highest at the time of flower bud formation and lowest at the time of preceding and following flower bud formation. Hence, this study aims to identify the genes involved in the flowering of local S. rebaudiana accession MS007 by investigating the transcriptomic data of two stages of growth, before flowering (BF) and after flowering (AF) that were deposited under accession number SRX6362785 and SRX6362784 at the NCBI SRA database. The transcriptomic study managed to annotate 108299 unigenes of S. rebaudiana with 8871 and 9832 genes that were differentially expressed in BF and AF samples, respectively. These genes involved in various metabolic pathways related to flower development, response to stimulus as well as photosynthesis. Pheophorbide A oxygenase (PAO), eukaryotic translation initiation factor 3 subunit E (TIF3E1), and jasmonate ZIM domain-containing protein 1 (JAZ1) were found to be involved in the flower development. The outcome of this study will help further research in the manipulation of the flowering process, especially in the breeding programme to develop photo-insensitive Stevia plant. TUBITAK 2021 Article PeerReviewed pdf en cc_by_4 http://umpir.ump.edu.my/id/eprint/33390/1/Transcriptome%20profiling%20of%20stevia%20rebaudiana%20ms007%20revealed%20genes.pdf Nurul Hidayah, Samsulrizal and Khairul Shahyidi, Khadzran and Meenakshi Sundram, Tamil Chelvan and Zarina, Zainuddin and Siti Hajar Noor, Shaarani and Nur Sabrina, Ahmad Azmi and Sarahani, Harun (2021) Transcriptome profiling of stevia rebaudiana ms007 revealed genes involved in flowedevelopment. Turkish Journal of Biology, 45 (3). pp. 314-322. ISSN 1300-0152. (Published) https://doi.org/10.3906/biy-2103-3 https://doi.org/10.3906/biy-2103-3 |
| spellingShingle | QK Botany T Technology (General) TP Chemical technology Nurul Hidayah, Samsulrizal Khairul Shahyidi, Khadzran Meenakshi Sundram, Tamil Chelvan Zarina, Zainuddin Siti Hajar Noor, Shaarani Nur Sabrina, Ahmad Azmi Sarahani, Harun Transcriptome profiling of stevia rebaudiana ms007 revealed genes involved in flowedevelopment |
| title | Transcriptome profiling of stevia rebaudiana ms007 revealed genes involved in flowedevelopment |
| title_full | Transcriptome profiling of stevia rebaudiana ms007 revealed genes involved in flowedevelopment |
| title_fullStr | Transcriptome profiling of stevia rebaudiana ms007 revealed genes involved in flowedevelopment |
| title_full_unstemmed | Transcriptome profiling of stevia rebaudiana ms007 revealed genes involved in flowedevelopment |
| title_short | Transcriptome profiling of stevia rebaudiana ms007 revealed genes involved in flowedevelopment |
| title_sort | transcriptome profiling of stevia rebaudiana ms007 revealed genes involved in flowedevelopment |
| topic | QK Botany T Technology (General) TP Chemical technology |
| url | http://umpir.ump.edu.my/id/eprint/33390/1/Transcriptome%20profiling%20of%20stevia%20rebaudiana%20ms007%20revealed%20genes.pdf |
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