Draft genome of the aquatic moss Fontinalis antipyretica (Fontinalaceae, Bryophyta)
Mosses comprise one of three lineages forming a sister group to extant vascular plants. Having emerged from an early split in the diversification of embryophytes, mosses may offer complementary insights into the evolution of traits following the transition to, and colonization of, land....
| Main Authors: | , , , , , , , , , |
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| Format: | Article |
| Language: | English |
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GigaScience Press
2020-11-01
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| Series: | GigaByte |
| Online Access: | https://gigabytejournal.com/articles/8 |
| _version_ | 1797871048312487936 |
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| author | Jin Yu Linzhou Li Sibo Wang Shanshan Dong Ziqiang Chen Nikisha Patel Bernard Goffinet Hongfeng Chen Huan Liu Yang Liu |
| author_facet | Jin Yu Linzhou Li Sibo Wang Shanshan Dong Ziqiang Chen Nikisha Patel Bernard Goffinet Hongfeng Chen Huan Liu Yang Liu |
| author_sort | Jin Yu |
| collection | DOAJ |
| description |
Mosses comprise one of three lineages forming a sister group to extant vascular plants. Having emerged from an early split in the diversification of embryophytes, mosses may offer complementary insights into the evolution of traits following the transition to, and colonization of, land. Here, we report the draft nuclear genome of Fontinalis antipyretica (Fontinalaceae, Hypnales), a charismatic aquatic moss that is widespread in temperate regions of the Northern Hemisphere. We sequenced and de novo-assembled its genome using the 10X Genomics method. The genome comprises 385.2 Mbp, with a scaffold N50 of 45.8 Kbp. The assembly captured 87.2% of the 430 genes in the BUSCO Viridiplantae odb10 dataset. The newly generated F. antipyretica genome is the third moss genome, and the second seedless aquatic plant genome, to be sequenced and assembled to date.
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| first_indexed | 2024-04-10T00:37:00Z |
| format | Article |
| id | doaj.art-004d8ca25d394c8688832e7e7d82c410 |
| institution | Directory Open Access Journal |
| issn | 2709-4715 |
| language | English |
| last_indexed | 2024-04-10T00:37:00Z |
| publishDate | 2020-11-01 |
| publisher | GigaScience Press |
| record_format | Article |
| series | GigaByte |
| spelling | doaj.art-004d8ca25d394c8688832e7e7d82c4102023-03-14T11:18:06ZengGigaScience PressGigaByte2709-47152020-11-0110.46471/gigabyte.8Draft genome of the aquatic moss Fontinalis antipyretica (Fontinalaceae, Bryophyta)Jin Yu 0Linzhou Li 1Sibo Wang 2Shanshan Dong 3Ziqiang Chen 4Nikisha Patel 5Bernard Goffinet 6https://orcid.org/0000-0002-2754-3895Hongfeng Chen 7Huan Liu 8Yang Liu 9https://orcid.org/0000-0002-5942-839XBGI Education Center, University of Chinese Academy of Sciences, Shenzhen 518083, China, State Key Laboratory of Agricultural Genomics, BGI-Shenzhen & China National GeneBank, Shenzhen 518083, ChinaState Key Laboratory of Agricultural Genomics, BGI-Shenzhen & China National GeneBank, Shenzhen 518083, ChinaState Key Laboratory of Agricultural Genomics, BGI-Shenzhen & China National GeneBank, Shenzhen 518083, ChinaLaboratory of Southern Subtropical Plant Diversity, Fairy Lake Botanical Garden, Shenzhen & Chinese Academy of Sciences, Shenzhen 518004, ChinaCollege of Chinese Medicine Materials, Jilin Agricultural University, Changchun 130012, ChinaDepartment of Ecology and Evolutionary Biology, University of Connecticut, Storrs, CT 06269-3043, USADepartment of Ecology and Evolutionary Biology, University of Connecticut, Storrs, CT 06269-3043, USASouth China Botanical Garden, Chinese Academy of Sciences, Guangzhou 510650, ChinaState Key Laboratory of Agricultural Genomics, BGI-Shenzhen & China National GeneBank, Shenzhen 518083, ChinaState Key Laboratory of Agricultural Genomics, BGI-Shenzhen & China National GeneBank, Shenzhen 518083, China, Laboratory of Southern Subtropical Plant Diversity, Fairy Lake Botanical Garden, Shenzhen & Chinese Academy of Sciences, Shenzhen 518004, China Mosses comprise one of three lineages forming a sister group to extant vascular plants. Having emerged from an early split in the diversification of embryophytes, mosses may offer complementary insights into the evolution of traits following the transition to, and colonization of, land. Here, we report the draft nuclear genome of Fontinalis antipyretica (Fontinalaceae, Hypnales), a charismatic aquatic moss that is widespread in temperate regions of the Northern Hemisphere. We sequenced and de novo-assembled its genome using the 10X Genomics method. The genome comprises 385.2 Mbp, with a scaffold N50 of 45.8 Kbp. The assembly captured 87.2% of the 430 genes in the BUSCO Viridiplantae odb10 dataset. The newly generated F. antipyretica genome is the third moss genome, and the second seedless aquatic plant genome, to be sequenced and assembled to date. https://gigabytejournal.com/articles/8 |
| spellingShingle | Jin Yu Linzhou Li Sibo Wang Shanshan Dong Ziqiang Chen Nikisha Patel Bernard Goffinet Hongfeng Chen Huan Liu Yang Liu Draft genome of the aquatic moss Fontinalis antipyretica (Fontinalaceae, Bryophyta) GigaByte |
| title | Draft genome of the aquatic moss Fontinalis antipyretica (Fontinalaceae, Bryophyta) |
| title_full | Draft genome of the aquatic moss Fontinalis antipyretica (Fontinalaceae, Bryophyta) |
| title_fullStr | Draft genome of the aquatic moss Fontinalis antipyretica (Fontinalaceae, Bryophyta) |
| title_full_unstemmed | Draft genome of the aquatic moss Fontinalis antipyretica (Fontinalaceae, Bryophyta) |
| title_short | Draft genome of the aquatic moss Fontinalis antipyretica (Fontinalaceae, Bryophyta) |
| title_sort | draft genome of the aquatic moss fontinalis antipyretica fontinalaceae bryophyta |
| url | https://gigabytejournal.com/articles/8 |
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