Swarm v2: highly-scalable and high-resolution amplicon clustering

Swarm v2: highly-scalable and high-resolution amplicon clustering

Previously we presented Swarm v1, a novel and open source amplicon clustering program that produced fine-scale molecular operational taxonomic units (OTUs), free of arbitrary global clustering thresholds and input-order dependency. Swarm v1 worked with an initial phase that used iterative single-lin...

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Bibliographic Details
Main Authors: Frédéric Mahé, Torbjørn Rognes, Christopher Quince, Colomban de Vargas, Micah Dunthorn
Format: Article
Language:English
Published: PeerJ Inc. 2015-12-01
Series:PeerJ
Subjects:
Environmental diversity
Barcoding
Molecular operational taxonomic units
Online Access:https://peerj.com/articles/1420.pdf

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