The determination and analysis of the complete mitochondrial genome of Dario dario (Anabantiformes: Badidae)
The classification of Badidae family based on morphology has been revised several times, but data on complete mitogenome are scarce, the complete mitochondrial genome of the Badidae fish Dario dario was characterized for the first time in the present study. The whole mitogenome was 16,830 bp in size...
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2021-10-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2021.1981164 |
| _version_ | 1797638682098794496 |
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| author | Qi Wang Xinyu Zhao Chuanchen Ren Fang Meng Hongqiang Wang Yifan Liu Bingjian Liu Enshang Yang |
| author_facet | Qi Wang Xinyu Zhao Chuanchen Ren Fang Meng Hongqiang Wang Yifan Liu Bingjian Liu Enshang Yang |
| author_sort | Qi Wang |
| collection | DOAJ |
| description | The classification of Badidae family based on morphology has been revised several times, but data on complete mitogenome are scarce, the complete mitochondrial genome of the Badidae fish Dario dario was characterized for the first time in the present study. The whole mitogenome was 16,830 bp in size and consisted of 13 protein-coding genes, 22 tRNAs, two rRNAs genes, a control region and origin of light-strand replication. The proportion of coding sequences with a total length of 11,431 bp was 67.92%, which encoded 3800 amino acids. The genome composition was highly A + T biased (58.12%), and exhibited a negative AT-skew (–0.0045) and GC-skew (–0.2347). All protein-coding genes started with ATG except for GTG in CO1, while stopped with the standard TAN codons or a single T. The control region (D-loop) ranging from 15,658 bp to 16,830 bp was 1173 bp in size. Phylogenetic analysis showed that D. dario was most closely related to Badis badis. The complete mitochondrial genome sequence provided new insight into taxonomic classification, and a more complex picture of species diversity within the Anabantiformes. |
| first_indexed | 2024-03-11T13:07:06Z |
| format | Article |
| id | doaj.art-00d6a088f64847adb079bad3eda20f3b |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:07:06Z |
| publishDate | 2021-10-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-00d6a088f64847adb079bad3eda20f3b2023-11-03T14:28:31ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592021-10-016103073307510.1080/23802359.2021.19811641981164The determination and analysis of the complete mitochondrial genome of Dario dario (Anabantiformes: Badidae)Qi Wang0Xinyu Zhao1Chuanchen Ren2Fang Meng3Hongqiang Wang4Yifan Liu5Bingjian Liu6Enshang Yang7National Engineering Research Center for Marine Aquaculture, Zhejiang Ocean UniversityNational Engineering Research Center for Marine Aquaculture, Zhejiang Ocean UniversityNational Engineering Research Center for Marine Aquaculture, Zhejiang Ocean UniversityNational Engineering Research Center for Marine Aquaculture, Zhejiang Ocean UniversityZhoushan Hospital of Zhejiang ProvinceNational Engineering Research Center for Marine Aquaculture, Zhejiang Ocean UniversityNational Engineering Research Center for Marine Aquaculture, Zhejiang Ocean UniversitySchool of Marine Engineering Equipment, Zhejiang Ocean UniversityThe classification of Badidae family based on morphology has been revised several times, but data on complete mitogenome are scarce, the complete mitochondrial genome of the Badidae fish Dario dario was characterized for the first time in the present study. The whole mitogenome was 16,830 bp in size and consisted of 13 protein-coding genes, 22 tRNAs, two rRNAs genes, a control region and origin of light-strand replication. The proportion of coding sequences with a total length of 11,431 bp was 67.92%, which encoded 3800 amino acids. The genome composition was highly A + T biased (58.12%), and exhibited a negative AT-skew (–0.0045) and GC-skew (–0.2347). All protein-coding genes started with ATG except for GTG in CO1, while stopped with the standard TAN codons or a single T. The control region (D-loop) ranging from 15,658 bp to 16,830 bp was 1173 bp in size. Phylogenetic analysis showed that D. dario was most closely related to Badis badis. The complete mitochondrial genome sequence provided new insight into taxonomic classification, and a more complex picture of species diversity within the Anabantiformes.http://dx.doi.org/10.1080/23802359.2021.1981164dario dariobadidaeanabantiformesmitochondrial genomephylogenetic relationship |
| spellingShingle | Qi Wang Xinyu Zhao Chuanchen Ren Fang Meng Hongqiang Wang Yifan Liu Bingjian Liu Enshang Yang The determination and analysis of the complete mitochondrial genome of Dario dario (Anabantiformes: Badidae) Mitochondrial DNA. Part B. Resources dario dario badidae anabantiformes mitochondrial genome phylogenetic relationship |
| title | The determination and analysis of the complete mitochondrial genome of Dario dario (Anabantiformes: Badidae) |
| title_full | The determination and analysis of the complete mitochondrial genome of Dario dario (Anabantiformes: Badidae) |
| title_fullStr | The determination and analysis of the complete mitochondrial genome of Dario dario (Anabantiformes: Badidae) |
| title_full_unstemmed | The determination and analysis of the complete mitochondrial genome of Dario dario (Anabantiformes: Badidae) |
| title_short | The determination and analysis of the complete mitochondrial genome of Dario dario (Anabantiformes: Badidae) |
| title_sort | determination and analysis of the complete mitochondrial genome of dario dario anabantiformes badidae |
| topic | dario dario badidae anabantiformes mitochondrial genome phylogenetic relationship |
| url | http://dx.doi.org/10.1080/23802359.2021.1981164 |
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