Complete Genome Sequences of Septoria linicola: A Resource for Studying a Damaging Flax Pathogen
Fungal genus Septoria causes diseases in a wide range of plants. Here, we report the first genome sequences of two strains of Septoria linicola, the causal agent of the pasmo disease of flax (Linum usitatissimum). The genome of the first strain, SE15195, was fully assembled in 16 chromosomes, while...
| Main Authors: | , , , , , , , |
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| Format: | Article |
| Language: | English |
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The American Phytopathological Society
2023-01-01
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| Series: | Molecular Plant-Microbe Interactions |
| Subjects: | |
| Online Access: | https://apsjournals.apsnet.org/doi/10.1094/MPMI-09-22-0185-A |
| _version_ | 1828056142424571904 |
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| author | Nicolas Lapalu Adeline Simon Boris Demenou Delphine Paumier Marie-Pierre Guillot Lilian Gout Frederic Suffert Romain Valade |
| author_facet | Nicolas Lapalu Adeline Simon Boris Demenou Delphine Paumier Marie-Pierre Guillot Lilian Gout Frederic Suffert Romain Valade |
| author_sort | Nicolas Lapalu |
| collection | DOAJ |
| description | Fungal genus Septoria causes diseases in a wide range of plants. Here, we report the first genome sequences of two strains of Septoria linicola, the causal agent of the pasmo disease of flax (Linum usitatissimum). The genome of the first strain, SE15195, was fully assembled in 16 chromosomes, while 35 unitigs were obtained for a second strain, SE14017. Structural annotations predicted 13,096 and 13,085 protein-encoding genes and transposable elements content of 19.0 and 18.1% of the genome for SE15195 and SE14017, respectively. The four smaller chromosomes 13 to 16 show genomics features of potential accessory chromosomes. The assembly of these two genomes is a new resource for studying S. linicola and improving management of pasmo. [Graphic: see text] Copyright © 2022 The Author(s). This is an open access article distributed under the CC BY-NC-ND 4.0 International license. |
| first_indexed | 2024-04-10T20:49:46Z |
| format | Article |
| id | doaj.art-012af0987f8e430988bea23bc81ffea3 |
| institution | Directory Open Access Journal |
| issn | 0894-0282 1943-7706 |
| language | English |
| last_indexed | 2024-04-10T20:49:46Z |
| publishDate | 2023-01-01 |
| publisher | The American Phytopathological Society |
| record_format | Article |
| series | Molecular Plant-Microbe Interactions |
| spelling | doaj.art-012af0987f8e430988bea23bc81ffea32023-01-23T15:38:42ZengThe American Phytopathological SocietyMolecular Plant-Microbe Interactions0894-02821943-77062023-01-01361596310.1094/MPMI-09-22-0185-AComplete Genome Sequences of Septoria linicola: A Resource for Studying a Damaging Flax PathogenNicolas Lapalu0Adeline Simon1Boris Demenou2Delphine Paumier3Marie-Pierre Guillot4Lilian Gout5Frederic Suffert6Romain Valade7Université Paris Saclay, INRAE, UR BIOGER, 78850 Thiverval-Grignon, FranceUniversité Paris Saclay, INRAE, UR BIOGER, 78850 Thiverval-Grignon, FranceARVALIS Institut du Végétal, 31450 Baziège, FranceARVALIS Institut du Végétal, 91720 Boigneville, FranceUniversité Paris Saclay, INRAE, UR BIOGER, 78850 Thiverval-Grignon, FranceUniversité Paris Saclay, INRAE, UR BIOGER, 78850 Thiverval-Grignon, FranceUniversité Paris Saclay, INRAE, UR BIOGER, 78850 Thiverval-Grignon, FranceARVALIS Institut du Végétal, 91720 Boigneville, FranceFungal genus Septoria causes diseases in a wide range of plants. Here, we report the first genome sequences of two strains of Septoria linicola, the causal agent of the pasmo disease of flax (Linum usitatissimum). The genome of the first strain, SE15195, was fully assembled in 16 chromosomes, while 35 unitigs were obtained for a second strain, SE14017. Structural annotations predicted 13,096 and 13,085 protein-encoding genes and transposable elements content of 19.0 and 18.1% of the genome for SE15195 and SE14017, respectively. The four smaller chromosomes 13 to 16 show genomics features of potential accessory chromosomes. The assembly of these two genomes is a new resource for studying S. linicola and improving management of pasmo. [Graphic: see text] Copyright © 2022 The Author(s). This is an open access article distributed under the CC BY-NC-ND 4.0 International license.https://apsjournals.apsnet.org/doi/10.1094/MPMI-09-22-0185-AflaxgenomepasmoSeptoria linicola |
| spellingShingle | Nicolas Lapalu Adeline Simon Boris Demenou Delphine Paumier Marie-Pierre Guillot Lilian Gout Frederic Suffert Romain Valade Complete Genome Sequences of Septoria linicola: A Resource for Studying a Damaging Flax Pathogen Molecular Plant-Microbe Interactions flax genome pasmo Septoria linicola |
| title | Complete Genome Sequences of Septoria linicola: A Resource for Studying a Damaging Flax Pathogen |
| title_full | Complete Genome Sequences of Septoria linicola: A Resource for Studying a Damaging Flax Pathogen |
| title_fullStr | Complete Genome Sequences of Septoria linicola: A Resource for Studying a Damaging Flax Pathogen |
| title_full_unstemmed | Complete Genome Sequences of Septoria linicola: A Resource for Studying a Damaging Flax Pathogen |
| title_short | Complete Genome Sequences of Septoria linicola: A Resource for Studying a Damaging Flax Pathogen |
| title_sort | complete genome sequences of septoria linicola a resource for studying a damaging flax pathogen |
| topic | flax genome pasmo Septoria linicola |
| url | https://apsjournals.apsnet.org/doi/10.1094/MPMI-09-22-0185-A |
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